Phage HK022 15:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

tail length tape measure protein

Synonyms
Product description

gp16

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions <protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MASKSLGTLT IDLIAKVGGF VSGLSQAERA SQKWRKQVKE DAAAAAAAMT GFATAVGAAA
IGAGVAGYNL LKTTSRQITE SDRWAKSLNM STQSLLAWQY AAEKAGVSGD QMADIFKDVG
DKIGDAVLNK SGEAVGALDA LGLSAKKLAG ESPDKQLLAI SDALEKVKSN AEKTTILESL
GNDLSKMLPL LDNGSEKLRQ YMDAAKKFGV APDDADIEKL VRVNALFEDM ETQVNGVKIE
LAAGLASVDL SGLQKSIGDM GDVFKDPAVI QGLTDLVGGV VDLATWLVRV GAEAGKLIDQ
YKGGSSVGLN ASIPEIERRI KNLNADLDDK GILASFNRIG MDVSGKEAER AELQRRLAFL
RNSQSTLPEI KLPEPVKTNY TLGAGETNGK PQKNTSGQKL DSAFKSAERS YMRQIELIDT
TGKKTAVVTE QQKLQFDIAD GKLQGLNETQ KKRLASLAQE VDRLNAVKKA NEENAKVAAF
VANLQEQNEN ARADLGVDIH GAGLGDKQRE RLRERLSIER SYLDQQRDLQ KQYQSGDISQ
TVYDRETQAL KDAQAERLGI QEDYYSQIDA LQSDWVTGAR DGLADWVDDS TNYATLAADA
MKSALSGISS NIVDMLNGNK ASWKDWGVSV LKIIEQVMVN MMIANAASSI GSLFGGAASS
SASSGTAIQS YGASLQFNAK GGVYSSADLS QYSNSVVSSP TLFAFAKGAG LMGEAGPEAI
MPLTRAADGS LGVRAMGISG LTPGGSSAPQ VSIQIDGNGN TQAQASGGYE QFGREVGSFV
DRRYRELIGR DLSPGGAVWN LAKGGR
Length

806

Mol. Wt

85.487 kDa

pI

5.1 (calculated)

Extinction coefficient

74,830 (calc based on 17 Y, 9 W, and 0 C residues)

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Domains/Motifs/Modification Sites

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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

43 - 65

Predicted membrane-spanning helix.

TMD predicted by TMHMM[1]


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<motif_map/>

tmhmm.php?gene=Phage_HK022_15&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
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Structures

<beststructure> gene=Phage_HK022_15 taxon=10742 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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<protect> See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed

Categories

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