Help:Gbrowse/MG1655
MG1655 currently has more annotation tracks than any other E. coli genome in our Gbrowse.
Contents
Extra annotation tracks
RegulonDB tracks
- Transcription units: Transcription units assembled from RegulonDB data on transcription units, promoters, and terminators. Last updated: March 2011.
- RNA 5' ends
High-throughput Experimental tracks
Protein locations from ChIP-chip and ChiP-seq experiments based on Paper
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| Description | Reference | Protein | Notes |
|---|---|---|---|
|
Grainger 2006 |
FNR; IHF |
||
|
Herring 2005 |
RNAP |
||
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Mooney 2009 |
NusA; NusG; Rho; Sigma 70; RNAp |
||
|
Cho 2009 |
RNAP |
RNAP-binding regions at the genome scale. Used a ChIP-chip method for E. coli K-12 MG1655 grown in the presence or absence of rifampicin under multiple growth conditions. | |
|
Grainger 2006 |
FIS; HNS; IHF |
||
|
Sanches-Romero 2010 |
SeqA |
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Cho 2011 |
SlmA |
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|
Vora 2009 |
Protein Occupancy | ||
|
Peters 2009 |
RNAP |
Rho directs widespread termination of intragenic and stable RNA transcription. | |
| edit table |
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Transcriptome data
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Grainger, DC et al. (2007) Transcription factor distribution in Escherichia coli: studies with FNR protein. Nucleic Acids Res. 35 269-78 PubMed
- ↑ Herring, CD et al. (2005) Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays. J. Bacteriol. 187 6166-74 PubMed
- ↑ Mooney, RA et al. (2009) Regulator trafficking on bacterial transcription units in vivo. Mol. Cell 33 97-108 PubMed
- ↑ Cho, BK et al. (2009) The transcription unit architecture of the Escherichia coli genome. Nat. Biotechnol. 27 1043-9 PubMed
- ↑ Grainger, DC et al. (2006) Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome. Nucleic Acids Res. 34 4642-52 PubMed
- ↑ Sánchez-Romero, MA et al. (2010) Dynamic distribution of seqa protein across the chromosome of escherichia coli K-12. MBio 1 PubMed
- ↑ Cho, H et al. (2011) Nucleoid occlusion factor SlmA is a DNA-activated FtsZ polymerization antagonist. Proc. Natl. Acad. Sci. U.S.A. 108 3773-8 PubMed
- ↑ Vora, T et al. (2009) Protein occupancy landscape of a bacterial genome. Mol. Cell 35 247-53 PubMed
- ↑ Peters, JM et al. (2009) Rho directs widespread termination of intragenic and stable RNA transcription. Proc. Natl. Acad. Sci. U.S.A. 106 15406-11 PubMed
