agaW:Gene Product(s)

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Gene

Gene Product(s)

Expression

Evolution

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Nomenclature

Function

Interactions

Localization

Sequence

Domains

Structure

Resources

Accessions

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References

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	AgaW
Synonyms	B3134, YhaZ, AgaW
Product description	PTS system N-acetylgalactosameine-specific IIC component 2
EC number (for enzymes)
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Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0005351	sugar:hydrogen symporter activity	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0762	F	Seeded from EcoCyc	complete
	GO:0006810	transport	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0813	P	Seeded from EcoCyc	complete
	GO:0008643	carbohydrate transport	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0762	P	Seeded from EcoCyc	complete
	GO:0009401	phosphoenolpyruvate-dependent sugar phosphotransferase system	GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR004700 SP_KW:KW-0598	P	Seeded from EcoCyc	complete
	GO:0016020	membrane	GO_REF:0000004 GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0397 SP_KW:KW-0472	C	Seeded from EcoCyc 12.5	complete
	GO:0016021	integral to membrane	GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR004700 SP_KW:KW-0812	C	Seeded from EcoCyc	complete
	GO:0046349	amino sugar biosynthetic process				P	Seeded from EcoCyc 11.1.	required fields missing
	GO:0005886	plasma membrane	GO_REF:0000004 GO_REF:0000004 GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_KW:KW-0997 SP_KW:KW-1003 SP_SL:SL-0037	C	Seeded from EcoCyc	complete
	GO:0005351	sugar:hydrogen symporter activity	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0762	F	Seeded from EcoCyc	complete
	GO:0005886	plasma membrane	GO_REF:0000004 GO_REF:0000004 GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_KW:KW-0997 SP_KW:KW-1003 SP_SL:SL-0037	C	Seeded from EcoCyc	complete
	GO:0006810	transport	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0813	P	Seeded from EcoCyc	complete
	GO:0008643	carbohydrate transport	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0762	P	Seeded from EcoCyc	complete
	GO:0009401	phosphoenolpyruvate-dependent sugar phosphotransferase system	GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR004700 SP_KW:KW-0598	P	Seeded from EcoCyc	complete
	GO:0016020	membrane	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0472	C	Seeded from EcoCyc	complete
	GO:0016021	integral to membrane	GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR004700 SP_KW:KW-0812	C	Seeded from EcoCyc	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Notes
plasma membrane	C-terminus localized in the cytoplasm with 3 predicted transmembrane domains	Daley et al. (2005)
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Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence	at EcoCyc MEISLLQAFA LGIIAFIAGL DMFNGLTHMH RPVVLGPLVG LVLGDLHTGI LTGGTLELVW MGLAPLAGAQ PPNVIIGTIV GTAFAITTGV KPDVAVGVAV PFAVAVQMGI TFLFSVMSGV MSRCDLATNP RRI
Length	133
Mol. Wt	13.721 kDa
pI	6.7 (calculated)
Extinction coefficient	5,500 - 5,625 (calc based on Y, 1 W, and 1 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki. Type Residues Description Notes Domain 1 - 133 PTS EIIC type-4 UniProt:P42905 Domain 5 - 27 Predicted membrane-spanning helix. TMD predicted by TMHMM Domain 34 - 56 Predicted membrane-spanning helix. TMD predicted by TMHMM Domain 94 - 116 Predicted membrane-spanning helix. TMD predicted by TMHMM edit table

<motif_map/> Click the image to view raw output from TMHMM.

Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki. Structures <beststructure>agaW 562</beststructure> Models View models at: EcoliPredict ModBase PSI-PRED Protein Quaternary Structure (PQS) Genomes TO Protein (GTOP) edit table

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
UniProt (EcoliWiki Page)	UniProt:P42905
PFAM (EcoliWiki Page)	PFAM:PF03609
RefSeq (EcoliWiki Page)	RefSeq:NP_417603
ECOO157CYC (EcoliWiki Page)	ECOO157CYC:Z4486-MONOMER
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Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

Categories

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