Sequenced E. coli Genomes
EcoliWiki plans to create gene lists for all available laboratory E. coli K-12, B, and C strains. Although the pathogenic strains of E. coli are not the focus of EcoliWiki, numerous strains of E. coli, non-pathogenic or pathogenic, have been sequenced or the projects are in progress. Use this table to track which genomes are available and where they are available from. Please add any strains you know are being sequenced or are finished.
| Strain | Sequencing status | Accessions (if applicable) | In EcoliWiki | Comments |
|---|---|---|---|---|
|
complete |
yes |
|||
|
complete |
yes |
|||
|
complete |
not yet |
This genome will be loaded as soon as possible - Nov 11, 2008 | ||
|
Escherichia coli (B) REL606 |
in progress |
not yet |
E. coli Genome Projects | |
|
E. coli BL21 (DE3) |
in progress |
not yet |
DOE Joint Genome Institute | |
|
E. coli BL21(DE3) |
in progress |
not yet |
Korea Research Institute of Bioscience and Biotechnology | |
|
E. coli 101-1 |
in progress |
no |
Enteroaggregative.
| |
|
E. coli 53638 |
in progress |
no |
53638 at JCVI Enteroinvasive. | |
|
E. coli B171 |
in progress |
no |
B171 at JCVI | |
|
E. coli B7A |
in progress |
no |
B7A at JCVI | |
|
E. coli E110019 |
in progress |
no |
Atypical enteropathogenic. | |
|
E. coli E22 |
in progress |
no |
Enteropathogenic. | |
|
E. coli E24377A |
in progress |
no |
E24377A at JCVI | |
|
E. coli F11 |
in progress |
no |
F11 at JCVI | |
|
E. coli HS |
in progress |
no |
HS at JCVI | |
|
E. coli SECEC SMS-3-5 |
in progress |
no |
SECEC SMS-3-5 at JCVI | |
|
E. coli O157:H7 EC4024 |
in progress |
no |
EC4024 at JCVI | |
|
E. coli O157:H7 EC4042 |
in progress |
no |
EC4042 at JCVI
| |
|
E. coli O157:H7 EC4045 |
in progress |
no |
EC4045 at JCVI | |
|
E. coli O157:H7 EC4076 |
in progress |
no |
EC4076 at JCVI | |
|
E. coli O157:H7 EC4113 |
in progress |
no |
EC4113 at JCVI | |
|
E. coli O157:H7 EC4115 |
complete |
no |
EC4115 at JCVI
| |
|
E. coli O157:H7 EC4196 |
in progress |
no |
EC4196 at JCVI | |
|
E. coli O157:H7 EC4206 |
in progress |
no |
EC4206 at JCVI
| |
|
E. coli O157:H7 EC4401 |
in progress |
no |
EC4401 at JCVI | |
|
E. coli O157:H7 EC4486 |
in progress |
no |
EC4486 at JCVI | |
|
E. coli O157:H7 EC4501 |
in progress |
no |
EC4501 at JCVI | |
|
E. coli O157:H7 EC508 |
in progress |
no |
EC508 at JCVI | |
|
E. coli O157:H7 TW14359 |
in progress |
no |
TW14359 Sequencing project | |
|
E. coli O157:H7 EC869 |
in progress |
no |
EC869 at JCVI | |
|
E. coli O157:H7 FRIK966 |
in progress |
no |
Entrez Genome Project | |
|
E. coli O157:H7 TW14588 |
in progress |
no |
TW14588 at JCVI | |
|
E. coli O157:H7 GZ-021210/cattle |
in progress |
no |
Entrez Genome Project | |
|
E. coli O157:H7 |
complete |
no |
||
|
E. coli APEC O1 |
complete |
no |
PMID:17293413[5]
| |
|
E. coli UTI89 |
complete |
no |
||
|
E. coli 042 |
in progress |
no |
Entrez Genome Project | |
|
E. coli 536 |
complete |
no |
PMID:16879640[7]
| |
|
E. coli ATCC 8739 |
complete |
not yet |
E. coli B strain
Joint Genome Institute
| |
| edit table |
- ↑ Blattner, FR et al. (1997) The complete genome sequence of Escherichia coli K-12. Science 277 1453-62 PubMed
- ↑ Hayashi, K et al. (2006) Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol. Syst. Biol. 2 2006.0007 PubMed
- ↑ Durfee, T et al. (2008) The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J. Bacteriol. 190 2597-606 PubMed
- ↑ Hayashi, T et al. (2001) Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res. 8 11-22 PubMed
- ↑ Johnson, TJ et al. (2007) The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes. J. Bacteriol. 189 3228-36 PubMed
- ↑ Chen, SL et al. (2006) Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Proc. Natl. Acad. Sci. U.S.A. 103 5977-82 PubMed
- ↑ Hochhut, B et al. (2006) Role of pathogenicity island-associated integrases in the genome plasticity of uropathogenic Escherichia coli strain 536. Mol. Microbiol. 61 584-95 PubMed