ycaM:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
| Standard name |
YcaM product |
|---|---|
| Synonyms |
predicted transporter product[1], B0899 product[2][1], YcaM product[2][1] |
| Product description | |
| EC number (for enzymes) |
|
| edit table | |
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0016020 |
membrane |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc 12.5 [4] |
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| GO:0016020 |
membrane |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc 12.5 [4] |
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| GO:0006810 |
transport |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [4] |
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| GO:0006865 |
amino_acid_transport |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [4] |
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| GO:0015171 |
amino_acid_transporter_activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc 12.5 [4] |
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| GO:0016020 |
membrane |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc 12.5 [4] |
||||
| GO:0016020 |
membrane |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc 12.5 [4] |
||||
| GO:0006810 |
transport |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [4] |
||||
| GO:0015292 |
uniporter activity |
F |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0016021 |
integral_to_membrane |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc 12.5 [4] |
| |||
| edit table |
Interactions
| Partner Type | Partner | Notes |
|---|---|---|
| edit table |
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Notes
Localization
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
|
plasma membrane |
C-terminus localized in the cytoplasm with 12 predicted transmembrane domains |
Daley et al. (2005) [5] |
|
| edit table |
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Notes
Structure and Physical Properties
Physical Properties
| Sequence |
MNLLFHTLLF CFFYLTCFIP NFIRLKIKCA AGYNFAFRYF RTSYLPRIIP RFTDAPLILA KDLSMAGNVQ EKQLRWYNIA LMSFITVWGF GNVVNNYANQ GLVVVFSWVF IFALYFTPYA LIVGQLGSTF KDGKGGVSTW IKHTMGPGLA YLAAWTYWVV HIPYLAQKPQ AILIALGWAM KGDGSLIKEY SVVALQGLTL VLFIFFMWVA SRGMKSLKIV GSVAGIAMFV MSLLYVAMAV TAPAITEVHI ATTNITWETF IPHIDFTYIT TISMLVFAVG GAEKISPYVN QTRNPGKEFP KGMLCLAVMV AVCAILGSLA MGMMFDSRNI PDDLMTNGQY YAFQKLGEYY NMGNTLMVIY AIANTLGQVA ALVFSIDAPL KVLLGDADSK YIPASLCRTN ASGTPVNGYF LTLVLVAILI MLPTLGIGDM NNLYKWLLNL NSVVMPLRYL WVFVAFIAVV RLAQKYKPEY VFIRNKPLAM TVGIWCFAFT AFACLTGIFP KMEAFTAEWT FQLALNVATP FVLVGLGLIF PLLARKANSK |
|---|---|
| Mol. Wt |
52.5 kDa (calc) [2] |
| pI | |
| Extinction coefficient |
110240 - 111240 (calc based on 26 Y, 13 W, and 8 C residues) |
| edit table | |
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Domains/Motifs/Modification Sites
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki. |
|
Structure
| Structures |
<beststructure>ycaM 562</beststructure> |
|---|---|
| Models |
View models at: |
| edit table |
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
Notes
Gene Product Resources
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Notes
Accessions in Other Databases
| Database | Accession | Notes |
|---|---|---|
| edit table |
See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
- ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed
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