dtd:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
| Standard name |
Dtd product |
|---|---|
| Synonyms |
D-tyr-tRNA(Tyr) deacylase product[1], B3887 product[2][1], Dtd product[2][1], YihZ product[2][1] |
| Product description |
D-Tyr-tRNATyr deacylase[2][3]; Component of ; [[:Category:Complex:D-Tyr-tRNATyr deacylase|D-Tyr-tRNATyr deacylase]][3] |
| EC number (for enzymes) | |
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See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Notes
Function
Gene Ontology
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
|
GO:0005737 |
cytoplasm |
C |
Seeded from Riley et al 2006 [1]. |
required fields missing | ||||
|
GO:0009451 |
RNA modification |
P |
Seeded from Riley et al 2006 [1]. |
required fields missing | ||||
|
GO:0006805 |
xenobiotic metabolic process |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
|
GO:0006399 |
tRNA metabolic process |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
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See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
Interactions
| Partner Type | Partner | Notes |
|---|---|---|
|
Protein |
Subunits of [[:Category:Complex:D-Tyr-tRNATyr deacylase|D-Tyr-tRNATyr deacylase]] |
could be indirect |
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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Notes
Localization
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
| edit table |
Notes
Structure and Physical Properties
Physical Properties
| Sequence |
MIALIQRVTR ASVTVEGEVT GEIGAGLLVL LGVEKDDDEQ KANRLCERVL GYRIFSDAEG KMNLNVQQAG GSVLVVSQFT LAADTERGMR PSFSKGASPD RAEALYDYFV ERCRQQEMNT QTGRFAADMQ VSLVNDGPVT FWLQV |
|---|---|
| Mol. Wt |
15.95 kDa (calc) [2] |
| pI | |
| Extinction coefficient |
9970 - 10220 (calc based on 3 Y, 1 W, and 2 C residues) |
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See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Domains/Motifs/Modification Sites
| Type | Residues | Description | Notes |
|---|---|---|---|
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Structure
| Structure Type | Organism | Accession | Residues covered | Notes |
|---|---|---|---|---|
|
X-RAY DIFFRACTION |
Escherichia coli |
1JKE D-Tyr tRNATyr deacylase from Escherichia coli |
||
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Notes
Gene Product Resources
| Resource type | Source | Notes/Reference |
|---|---|---|
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Notes
Accessions in Other Databases
| Database | Accession | Notes |
|---|---|---|
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See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.
Notes
Links
| Name | URL | Comments |
|---|---|---|
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See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7