Phage lambda FII:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
touch the Product_localization_table table.
Update TableEdit tables.
Line 35: Line 35:
*  
*  
****************************************************************************************** -->{{Product_nomenclature_help}}
****************************************************************************************** -->{{Product_nomenclature_help}}
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{| id="B4a2ff2cec8ef4" class=" tableEdit Product_nomenclature_table"


|-
|-
!align=left {{table heading style}} |Standard name
!align=left |Standard name
||
||
Fii
Fii
|-
|-
!align=left {{table heading style}} |Synonyms
!align=left |Synonyms
||
||
Fii, lambdap10
Fii, lambdap10
|-
|-
!align=left {{table heading style}} |Product description
!align=left |Product description
||
||
head-tail joining protein
head-tail joining protein
|-
|-
!align=left {{table heading style}} |EC number (for enzymes)
!align=left |EC number (for enzymes)
||
||




|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.B4a2ff2cec8ef4&page=164749&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table] ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.B4a2ff2cec8ef4&page=164749&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.B4a2ff2cec8ef4--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.B4a2ff2cec8ef4--></protect>
Line 73: Line 73:
*  
*  
****************************************************************************************** -->{{Product_GO_help}}
****************************************************************************************** -->{{Product_GO_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="L4a2ff2ceca172" class=" tableEdit GO_table_product dataTable"   
|- {{table_heading_style}}
|-
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.L4a2ff2ceca172&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=GO_table_product edit table] || || || || || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.L4a2ff2ceca172&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=GO_table_product edit table]</span> || || || || || || || ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.L4a2ff2ceca172--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.L4a2ff2ceca172--></protect>
Line 90: Line 90:
*  
*  
****************************************************************************************** -->{{Product_interactions_help}}
****************************************************************************************** -->{{Product_interactions_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="X4a2ff2cecb799" class=" tableEdit Product_interactions_table"   
|- {{table heading style}}
|-
!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.X4a2ff2cecb799&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=Product_interactions_table edit table] || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.X4a2ff2cecb799&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=Product_interactions_table edit table]</span> || || || ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.X4a2ff2cecb799--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.X4a2ff2cecb799--></protect>
Line 110: Line 110:
*  
*  
****************************************************************************************** -->{{Product_localization_help}}
****************************************************************************************** -->{{Product_localization_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="B4a2ff2ceccaae" class=" tableEdit Product_localization_table"   
|- {{table heading style}}
|-
!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.B4a2ff2ceccaae&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=Product_localization_table edit table] || || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.B4a2ff2ceccaae&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=Product_localization_table edit table]</span> || || || ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.B4a2ff2ceccaae--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.B4a2ff2ceccaae--></protect>
Line 134: Line 134:
*  
*  
****************************************************************************************** -->{{Product_physical_properties_help}}
****************************************************************************************** -->{{Product_physical_properties_help}}
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{| id="T4a2ff2cecdbc4" class=" tableEdit Product_phys_prop_table"


|-
|-
!align=left {{table heading style}} |Sequence
!align=left |Sequence
||
||
<pre>MADFDNLFDA AIARADETIR GYMGTSATIT SGEQSGAVIR GVFDDPENIS YAGQGVRVEG
<pre>MADFDNLFDA AIARADETIR GYMGTSATIT SGEQSGAVIR GVFDDPENIS YAGQGVRVEG
SSPSLFVRTD EVRQLRRGDT LTIGEENFWV DRVSPDDGGS CHLWLGRGVP PAVNRRR</pre>
SSPSLFVRTD EVRQLRRGDT LTIGEENFWV DRVSPDDGGS CHLWLGRGVP PAVNRRR</pre>
|-
|-
!align=left {{table heading style}} |Length
!align=left |Length
||
||
117
117
|-
|-
!align=left {{table heading style}} |Mol. Wt
!align=left |Mol. Wt
||
||
12.76 kDa
12.76 kDa
|-
|-
!align=left {{table heading style}} |pI
!align=left |pI
||
||
4.6 (calculated)
4.6 (calculated)
|-
|-
!align=left {{table heading style}} |Extinction coefficient
!align=left |Extinction coefficient
||
||
13,980 - 14,105 (calc based on 2 Y, 2 W, and 1 C residues)
13,980 - 14,105 (calc based on 2 Y, 2 W, and 1 C residues)


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.T4a2ff2cecdbc4&page=164749&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.T4a2ff2cecdbc4&page=164749&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.T4a2ff2cecdbc4--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.T4a2ff2cecdbc4--></protect>
Line 174: Line 174:
*  
*  
****************************************************************************************** -->{{Product_domains_motifs_help}}
****************************************************************************************** -->{{Product_domains_motifs_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="E4a2ff2cecf0aa" class=" tableEdit Product_motif_table"   
|- {{table heading style}}
|-
!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.E4a2ff2cecf0aa&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=Product_motif_table edit table] || || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.E4a2ff2cecf0aa&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=Product_motif_table edit table]</span> || || ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.E4a2ff2cecf0aa--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.E4a2ff2cecf0aa--></protect>
Line 199: Line 199:
*  
*  
****************************************************************************************** -->{{Product_structure_help}}
****************************************************************************************** -->{{Product_structure_help}}
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{| id="D4a2ff2ced0395" class=" tableEdit Product_structure_table"


|-
|-
!align=left {{table heading style}} |Structures
!align=left |Structures
||
||
<beststructure>
<beststructure>
Line 209: Line 209:
</beststructure>
</beststructure>
|-
|-
!align=left {{table heading style}} |Models
!align=left |Models
||
||
View models at:
View models at:
Line 218: Line 218:
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.D4a2ff2ced0395&page=164749&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.D4a2ff2ced0395&page=164749&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.D4a2ff2ced0395--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.D4a2ff2ced0395--></protect>
Line 256: Line 256:
*  
*  
****************************************************************************************** -->{{Product_resources_help}}
****************************************************************************************** -->{{Product_resources_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="V4a2ff2ced1547" class=" tableEdit Product_resource_table"   
|- {{table_heading_style}}
|-
!|Resource type!!Source!!Notes/Reference
!|Resource type!!Source!!Notes/Reference


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.V4a2ff2ced1547&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=Product_resource_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.V4a2ff2ced1547&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=Product_resource_table edit table]</span> || ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.V4a2ff2ced1547--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.V4a2ff2ced1547--></protect>
Line 277: Line 277:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="O4a2ff2ced27ec" class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|-
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
Line 289: Line 289:
   
   


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.O4a2ff2ced27ec&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.O4a2ff2ced27ec&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.O4a2ff2ced27ec--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.O4a2ff2ced27ec--></protect>
Line 306: Line 306:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|   id="K4a2ff2ced3aa9" class=" tableEdit Links_table"   
|- {{table_heading_style}}
|-
!|Name!!URL!!Comments
!|Name!!URL!!Comments


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.K4a2ff2ced3aa9&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.164749.K4a2ff2ced3aa9&page=164749&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.K4a2ff2ced3aa9--></protect>
<!--box uid=63ce1649aab8b3180235b0af7618f667.164749.K4a2ff2ced3aa9--></protect>

Revision as of 02:45, 9 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Fii

Synonyms

Fii, lambdap10

Product description

head-tail joining protein

EC number (for enzymes)



Notes

Function

[back to top]


Gene Ontology <protect> See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status


Interactions

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes


Notes

Structure and Physical Properties

[back to top]


Physical Properties <protect> See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence
MADFDNLFDA AIARADETIR GYMGTSATIT SGEQSGAVIR GVFDDPENIS YAGQGVRVEG
SSPSLFVRTD EVRQLRRGDT LTIGEENFWV DRVSPDDGGS CHLWLGRGVP PAVNRRR
Length

117

Mol. Wt

12.76 kDa

pI

4.6 (calculated)

Extinction coefficient

13,980 - 14,105 (calc based on 2 Y, 2 W, and 1 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes

<motif_map/>

Structure

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=Phage_lambda_FII taxon=10710 </beststructure>

Models

View models at:

</protect>

Structure figures

Notes

Gene Product Resources


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference


Notes

Accessions in Other Databases


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

GenBank

GenBank:NP_040589.1



Notes

Links



References


See Help:References for how to manage references in EcoliWiki.


Categories