ompL:Gene Product(s): Difference between revisions

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!align=left {{table heading style}} |Standard name
!align=left |Standard name
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OmpL  
OmpL  
|-
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!align=left {{table heading style}} |Synonyms
!align=left |Synonyms
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predicted outer membrane porin L<ref name='LIB:Riley_2006'/>, B3875<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YshA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OmpL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted outer membrane porin L<ref name='LIB:Riley_2006'/>, B3875<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YshA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OmpL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left {{table heading style}} |Product description
!align=left |Product description
||
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predicted outer membrane porin L<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted outer membrane porin L<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Outer membrane porin L<ref name='LIB:EcoGene'/>
Outer membrane porin L<ref name='LIB:EcoGene'/>
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!align=left {{table heading style}} |EC number (for enzymes)
!align=left |EC number (for enzymes)
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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complete  
complete  


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!|Partner Type!!Partner!!Notes!!References!!Evidence
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Experiment(s):EBI-1146860<br />  
Experiment(s):EBI-1146860<br />  


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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes
|-  
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outer membrane
Outer Membrane
|
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|PMID:11080145
|
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[http://www.york.ac.uk/res/thomas/Echolocation.cfm?EB_SubLocID=EB3156 EchoLocation:ompL]
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From EcoCyc<ref name='LIB:EcoCyc11.1'/>
 
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Outer Membrane
outer membrane
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|PMID:11080145
|
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[http://www.york.ac.uk/res/thomas/Echolocation.cfm?EB_SubLocID=EB3156 EchoLocation:ompL]  
   
|
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From EcoCyc<ref name='LIB:EcoCyc11.1'/>
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|-
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!align=left {{table heading style}} |Sequence
!align=left |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=G7814-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=G7814-MONOMER at EcoCyc]  
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KDHHWEITNT FRYRINEHWL PYFELRWLDR NVEPYHREQN QIRIGTKYFF</pre>  
KDHHWEITNT FRYRINEHWL PYFELRWLDR NVEPYHREQN QIRIGTKYFF</pre>  
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!align=left {{table heading style}} |Length
!align=left |Length
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230
230
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!align=left {{table heading style}} |Mol. Wt
!align=left |Mol. Wt
||
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27.2 kDa
27.2 kDa
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!align=left {{table heading style}} |pI
!align=left |pI
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6.2 (calculated)
6.2 (calculated)
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!align=left {{table heading style}} |Extinction coefficient
!align=left |Extinction coefficient
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59,820 (calc based on 18 Y, 6 W, and  C residues)
59,820 (calc based on 18 Y, 6 W, and  C residues)


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[http://www.uniprot.org/uniprot/P76773#section_features UniProt:P76773]  
[http://www.uniprot.org/uniprot/P76773#section_features UniProt:P76773]  


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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left {{table heading style}} |Models
!align=left |Models
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View models at:
View models at:
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* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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Revision as of 02:30, 9 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

OmpL

Synonyms

predicted outer membrane porin L[1], B3875[2][1], YshA[2][1], OmpL[2][1]

Product description

predicted outer membrane porin L[2][3]

Outer membrane porin L[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0005351

sugar:hydrogen symporter activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0762

F

Seeded from EcoCyc [5]

complete

GO:0006810

transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc [5]

complete

GO:0006811

ion transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0406

P

Seeded from EcoCyc [5]

complete

GO:0008643

carbohydrate transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0762

P

Seeded from EcoCyc [5]

complete

GO:0016020

membrane

GO_REF:0000004
GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472
SP_KW:KW-0626

C

Seeded from EcoCyc [5]

complete

GO:0016021

integral to membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc [5]

complete

GO:0019867

outer membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0557

C

Seeded from EcoCyc 12.5 [6]

complete

GO:0005886

plasma membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc [5]

complete

GO:0009279

cell outer membrane

GO_REF:0000004
GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_KW:KW-0998
SP_SL:SL-0040

C

Seeded from EcoCyc [5]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ybaK

PMID:16606699[7]

Experiment(s):EBI-1146860

Protein

yhdZ

PMID:16606699[7]

Experiment(s):EBI-1146860

Protein

groL

PMID:16606699[7]

Experiment(s):EBI-1146860

Protein

tsf

PMID:16606699[7]

Experiment(s):EBI-1146860

Protein

wecG

PMID:16606699[7]

Experiment(s):EBI-1146860
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

Outer Membrane

PMID:11080145

EchoLocation:ompL

outer membrane

From EcoCyc[3]


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MKKINAIILL SSLTSASVFA GAYVENREAY NLASDQGEVM LRVGYNFDMG AGIMLTNTYN
FQREDELKHG YNEIEGWYPL FKPTDKLTIQ PGGLINDKSI GSGGAVYLDV NYKFVPWFNL
TVRNRYNHNN YSSTDLSGEL DNNDTYEIGT YWNFKITDKF SYTFEPHYFM RVNDFNSSNG
KDHHWEITNT FRYRINEHWL PYFELRWLDR NVEPYHREQN QIRIGTKYFF
Length

230

Mol. Wt

27.2 kDa

pI

6.2 (calculated)

Extinction coefficient

59,820 (calc based on 18 Y, 6 W, and C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes

motif

1-20

UniProt Manual:Signal Peptides

UniProt:P76773

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ompL taxon=562,83333 </beststructure>

Models

View models at:

edit table

Structure figures

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7814-MONOMER

UniProt (EcoliWiki Page)

UniProt:P76773

PFAM (EcoliWiki Page)

PFAM:PF06178

RefSeq (EcoliWiki Page)

RefSeq:NP_418311


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Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 7.2 7.3 7.4 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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