nrdI:Gene Product(s): Difference between revisions

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!align=left {{table heading style}} |Standard name
!align=left |Standard name
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NrdI  
NrdI  
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!align=left {{table heading style}} |Synonyms
!align=left |Synonyms
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protein that stimulates ribonucleotide reduction<ref name='LIB:Riley_2006'/>, B2674<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgaO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NrdI<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
protein that stimulates ribonucleotide reduction<ref name='LIB:Riley_2006'/>, B2674<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgaO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NrdI<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left {{table heading style}} |Product description
!align=left |Product description
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conserved protein that may stimulate ribonucleotide reductase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
conserved protein that may stimulate ribonucleotide reductase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Part of nrdHIEF operon, function unknown; stimulatory effect on ribonucleotide reduction; non-essential gene<ref name='LIB:EcoGene'/>
Part of nrdHIEF operon, function unknown; stimulatory effect on ribonucleotide reduction; non-essential gene<ref name='LIB:EcoGene'/>
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!align=left {{table heading style}} |EC number (for enzymes)
!align=left |EC number (for enzymes)
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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complete  
complete  


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!|Compartment!!Description!!Evidence!!Source!!Notes
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!align=left {{table heading style}} |Sequence
!align=left |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=G7402-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=G7402-MONOMER at EcoCyc]  
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VRKGVTEFWQ RQPQNA</pre>  
VRKGVTEFWQ RQPQNA</pre>  
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!align=left {{table heading style}} |Length
!align=left |Length
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136
136
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!align=left {{table heading style}} |Mol. Wt
!align=left |Mol. Wt
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15.339 kDa
15.339 kDa
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!align=left {{table heading style}} |pI
!align=left |pI
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9.7 (calculated)
9.7 (calculated)
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!align=left {{table heading style}} |Extinction coefficient
!align=left |Extinction coefficient
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18,450 - 18,575 (calc based on 5 Y, 2 W, and 1 C residues)
18,450 - 18,575 (calc based on 5 Y, 2 W, and 1 C residues)


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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left {{table heading style}} |Models
!align=left |Models
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View models at:
View models at:
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* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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Revision as of 02:26, 9 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

NrdI

Synonyms

protein that stimulates ribonucleotide reduction[1], B2674[2][1], YgaO[2][1], NrdI[2][1]

Product description

conserved protein that may stimulate ribonucleotide reductase[2][3]

Part of nrdHIEF operon, function unknown; stimulatory effect on ribonucleotide reduction; non-essential gene[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0015949

nucleobase, nucleoside and nucleotide interconversion

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0006464

protein modification process

PMID:18799738[5]

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc [6]

complete

GO:0010181

FMN binding

PMID:18799738[5]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc [6]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MSQLVYFSSS SENTQRFIER LGLPAVRIPL NERERIQVDE PYILIVPSYG GGGTAGAVPR
QVIRFLNDEH NRALLRGVIA SGNRNFGEAY GRAGDVIARK CGVPWLYRFE LMGTQSDIEN
VRKGVTEFWQ RQPQNA
Length

136

Mol. Wt

15.339 kDa

pI

9.7 (calculated)

Extinction coefficient

18,450 - 18,575 (calc based on 5 Y, 2 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=nrdI taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7402-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0A772

RefSeq (EcoliWiki Page)

RefSeq:NP_417160


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Cotruvo, JA Jr & Stubbe, J (2008) NrdI, a flavodoxin involved in maintenance of the diferric-tyrosyl radical cofactor in Escherichia coli class Ib ribonucleotide reductase. Proc Natl Acad Sci U S A 105 14383-8 PubMed
  6. ↑ 6.0 6.1 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70

Categories

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