eutS:Gene Product(s): Difference between revisions

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!align=left {{table heading style}} |Standard name
!align=left |Standard name
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YpfE  
YpfE  
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!align=left {{table heading style}} |Synonyms
!align=left |Synonyms
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predicted carboxysome structural protein with predicted role in ethanol utilization<ref name='LIB:Riley_2006'/>, B2462<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YpfE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EutS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted carboxysome structural protein with predicted role in ethanol utilization<ref name='LIB:Riley_2006'/>, B2462<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YpfE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EutS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left {{table heading style}} |Product description
!align=left |Product description
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predicted carboxysome structural protein with predicted role in ethanolamine utilization<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted carboxysome structural protein with predicted role in ethanolamine utilization<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Ethanolamine catabolic microcompartment shell protein<ref name='LIB:EcoGene'/>
Ethanolamine catabolic microcompartment shell protein<ref name='LIB:EcoGene'/>
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!align=left {{table heading style}} |EC number (for enzymes)
!align=left |EC number (for enzymes)
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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required fields missing   
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Experiment(s):EBI-1142911<br />  
Experiment(s):EBI-1142911<br />  


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!|Compartment!!Description!!Evidence!!Source!!Notes
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|-
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!align=left {{table heading style}} |Sequence
!align=left |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=G7292-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=G7292-MONOMER at EcoCyc]  
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LGRLLNYTLC EMTKS</pre>  
LGRLLNYTLC EMTKS</pre>  
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!align=left {{table heading style}} |Length
!align=left |Length
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135
135
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!align=left {{table heading style}} |Mol. Wt
!align=left |Mol. Wt
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14.688 kDa
14.688 kDa
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!align=left {{table heading style}} |pI
!align=left |pI
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7.5 (calculated)
7.5 (calculated)
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!align=left {{table heading style}} |Extinction coefficient
!align=left |Extinction coefficient
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5,960 - 6,085 (calc based on 4 Y,  W, and 1 C residues)
5,960 - 6,085 (calc based on 4 Y,  W, and 1 C residues)


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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left {{table heading style}} |Models
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View models at:
View models at:
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* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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Revision as of 00:57, 9 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YpfE

Synonyms

predicted carboxysome structural protein with predicted role in ethanol utilization[1], B2462[2][1], YpfE[2][1], EutS[2][1]

Product description

predicted carboxysome structural protein with predicted role in ethanolamine utilization[2][3]

Ethanolamine catabolic microcompartment shell protein[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0006580

ethanolamine metabolic process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR009307

P

Seeded from EcoCyc [5]

complete

GO:0009310

amine catabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Q79BD2

PMID:16606699[6]

Experiment(s):EBI-1142911

Protein

yhjB

PMID:16606699[6]

Experiment(s):EBI-1142911

Protein

phnN

PMID:16606699[6]

Experiment(s):EBI-1142911

Protein

ybhS

PMID:16606699[6]

Experiment(s):EBI-1142911

Protein

sfmC

PMID:16606699[6]

Experiment(s):EBI-1142911

Protein

greB

PMID:16606699[6]

Experiment(s):EBI-1142911

Protein

rplD

PMID:16606699[6]

Experiment(s):EBI-1142911

Protein

alpA

PMID:16606699[6]

Experiment(s):EBI-1142911
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MPNFVIYSDE KLSRYTKVFH RRRLMDKERI IQEFVPGKQV TLAHLIAHPG EELAKKIGVP
DAGAIGIMTL TPGETAMIAG DLALKAADVH IGFLDRFSGA LVIYGSVGAV EEALSQTVSG
LGRLLNYTLC EMTKS
Length

135

Mol. Wt

14.688 kDa

pI

7.5 (calculated)

Extinction coefficient

5,960 - 6,085 (calc based on 4 Y, W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=eutS taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7292-MONOMER

UniProt (EcoliWiki Page)

UniProt:P63746

PFAM (EcoliWiki Page)

PFAM:PF06132

RefSeq (EcoliWiki Page)

RefSeq:NP_416957


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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