cysW:Gene Product(s): Difference between revisions

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!align=left {{table heading style}} |Standard name
!align=left |Standard name
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CysW  
CysW  
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!align=left {{table heading style}} |Synonyms
!align=left |Synonyms
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sulfate/thiosulfate transporter subunit<ref name='LIB:Riley_2006'/>, membrane component of ABC superfamily<ref name='LIB:Riley_2006'/>, B2423<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CysW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
sulfate/thiosulfate transporter subunit<ref name='LIB:Riley_2006'/>, membrane component of ABC superfamily<ref name='LIB:Riley_2006'/>, B2423<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CysW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left {{table heading style}} |Product description
!align=left |Product description
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CysW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
CysW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Membrane-bound sulfate transport protein; may also transport molybdate<ref name='LIB:EcoGene'/>
Membrane-bound sulfate transport protein; may also transport molybdate<ref name='LIB:EcoGene'/>
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!align=left {{table heading style}} |EC number (for enzymes)
!align=left |EC number (for enzymes)
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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complete  
complete  


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!align=left {{table heading style}} |Sequence
!align=left |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=CYSW-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=CYSW-MONOMER at EcoCyc]  
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IITLFLKSML QWRLENQEKR AQQEEHHEH</pre>  
IITLFLKSML QWRLENQEKR AQQEEHHEH</pre>  
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!align=left {{table heading style}} |Length
!align=left |Length
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149
149
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!align=left {{table heading style}} |Mol. Wt
!align=left |Mol. Wt
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16.674 kDa
16.674 kDa
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!align=left {{table heading style}} |pI
!align=left |pI
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5.3 (calculated)
5.3 (calculated)
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!align=left {{table heading style}} |Extinction coefficient
!align=left |Extinction coefficient
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24,980 - 25,105 (calc based on 2 Y, 4 W, and 1 C residues)
24,980 - 25,105 (calc based on 2 Y, 4 W, and 1 C residues)


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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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!align=left {{table heading style}} |Models
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View models at:
View models at:
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* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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Revision as of 00:32, 9 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

CysW

Synonyms

sulfate/thiosulfate transporter subunit[1], membrane component of ABC superfamily[1], B2423[2][1], CysW[2][1]

Product description

CysW[2][3]

Membrane-bound sulfate transport protein; may also transport molybdate[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0006810

transport

GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000515
InterPro:IPR005667
SP_KW:KW-0813

P

Seeded from EcoCyc [5]

complete

GO:0005215

transporter activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000515

F

Seeded from EcoCyc [5]

complete

GO:0015116

sulfate transmembrane transporter activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011866

F

Seeded from EcoCyc [5]

complete

GO:0008272

sulfate transport

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR011866
SP_KW:KW-0764

P

Seeded from EcoCyc [5]

complete

GO:0009276

Gram-negative-bacterium-type cell wall

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011866

C

Seeded from EcoCyc [5]

complete

GO:0016021

integral to membrane

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR011866
SP_KW:KW-0812

C

Seeded from EcoCyc [5]

complete

GO:0015563

uptake transmembrane transporter activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005667

F

Seeded from EcoCyc [5]

complete

GO:0016020

membrane

GO_REF:0000002
GO_REF:0000002
GO_REF:0000004
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000515
InterPro:IPR005667
SP_KW:KW-0397
SP_KW:KW-0472

C

Seeded from EcoCyc 12.5 [6]

complete

GO:0006790

sulfur metabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0005886

plasma membrane

GO_REF:0000004
GO_REF:0000004
GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997
SP_KW:KW-1003
SP_SL:SL-0037

C

Seeded from EcoCyc [5]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

plasma membrane

C-terminus localized in the cytoplasm with 6 predicted transmembrane domains

Daley et al. (2005) [7]

plasma membrane

From EcoCyc[3]


edit table


Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MFSWPGMVLV TIFVTCPFVV RELVPVMLSQ GSQEDEAAIL LGASGWQMFR RVTLPNIRWA
LLYGVVLTNA RAIGEFGAVS VVSGSIRGET LSLPLQIELL EQDYNTVGSF TAAALLTLMA
IITLFLKSML QWRLENQEKR AQQEEHHEH
Length

149

Mol. Wt

16.674 kDa

pI

5.3 (calculated)

Extinction coefficient

24,980 - 25,105 (calc based on 2 Y, 4 W, and 1 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
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<motif_map/>

tmhmm.php?gene=cysW&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=cysW taxon=562,83333 </beststructure>

Models

View models at:

edit table

Structure figures

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:CYSW-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0AEB0

RefSeq (EcoliWiki Page)

RefSeq:YP_026168


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Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed

Categories

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