Cis Element:Phage lambda ori: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left |Standard Name
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''Lambda ori''
''Lambda ori''
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!align=left {{table_heading_style}} |Synonyms
!align=left |Synonyms
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|-
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!align=left {{table_heading_style}} |Function
!align=left |Function
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Initiation control site for replication of the lambda genome
Initiation control site for replication of the lambda genome
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!align=left {{table_heading_style}} |Location
!align=left |Location
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within ''O'' gene
within ''O'' gene
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!align=left {{table_heading_style}} |SO terms
!align=left |SO terms
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{{GBrowseFastaLink|bacteriophage_lambda|NC_001416|39034|39137|FASTA Dump}}  
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Purified O protein protects lambda DNA in the ''ori'' region from ExoIII nuclease digestion (FIgure 2) and DNase cleavage (Figure 4).  
Purified O protein protects lambda DNA in the ''ori'' region from ExoIII nuclease digestion (FIgure 2) and DNase cleavage (Figure 4).  


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Revision as of 00:21, 9 January 2010

Cis element summary table

Standard Name

Lambda ori

Synonyms
Function

Initiation control site for replication of the lambda genome

Location

within O gene

SO terms


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Notes

Location and Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

Phage Lambda (NC_001416)

NC_001416: 39034..39137
gbrowse_img.php?coord=39024..39147&genome=bacteriophage_lambda&name=NC_001416&trackset=0&width=300&.png

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Notes

  • The lambda ori has 4 repeated segments (commonly referred to as 'iterons') located at the following coordinates[1]:
    • ori1 - nt 39034 - 39051
    • ori2 - nt 39054 - 39071
    • ori3 - nt 39078 - 39095
    • ori4 - nt 39101 - 39118

Below is the location of each of the ori iteron (underlined) in the lambda genomic sequence [1] : 

Lambda  nt39034  ATCCCTCAAA ACGAGGGAAA ATCCCCTAAAA CGAGGGATAA AACATCCCTC AAATTGGGGG ATTGCT  39100
Lambda  nt39101  ATCCCTCAAA ACAGGGGGAC ACAAAAGACA CTATTACAAA AGAAAAAAGA AAA   39153

Interactions

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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Phage lambda O protein

PMID:6264392[2]

Purified O protein protects lambda DNA in the ori region from ExoIII nuclease digestion (FIgure 2) and DNase cleavage (Figure 4).

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Notes

Mutant alleles and phenotypes

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Allele Nt change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
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Notes

Accessions

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

References

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  1. ↑ 1.0 1.1 Moore, DD et al. () Sequence organization of the origins of DNA replication in lambdoid coliphages. Gene 14 91-101 PubMed
  2. ↑ Tsurimoto, T & Matsubara, K (1981) Purified bacteriophage lambda O protein binds to four repeating sequences at the lambda replication origin. Nucleic Acids Res. 9 1789-99 PubMed

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