caiD:Gene Product(s): Difference between revisions

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|-
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!align=left {{table heading style}} |Standard name
!align=left |Standard name
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CaiD  
CaiD  
|-
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!align=left {{table heading style}} |Synonyms
!align=left |Synonyms
||
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crotonobetainyl CoA hydratase<ref name='LIB:Riley_2006'/>, B0036<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaaL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CaiD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
crotonobetainyl CoA hydratase<ref name='LIB:Riley_2006'/>, B0036<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaaL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CaiD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left {{table heading style}} |Product description
!align=left |Product description
||
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Carnitine racemase<ref name='LIB:EcoGene'/>
Carnitine racemase<ref name='LIB:EcoGene'/>
|-
|-
!align=left {{table heading style}} |EC number (for enzymes)
!align=left |EC number (for enzymes)
||
||
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.- 4.2.1.-]<ref name='LIB:Riley_2006'/>
* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.- 4.2.1.-]<ref name='LIB:Riley_2006'/>


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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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complete  
complete  


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!|Partner Type!!Partner!!Notes!!References!!Evidence
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Experiment(s):EBI-1135386<br />  
Experiment(s):EBI-1135386<br />  


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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Source!!Notes


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|-
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!align=left {{table heading style}} |Sequence
!align=left |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=CARNRACE-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=CARNRACE-MONOMER at EcoCyc]  
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AALKEIYRTT SEMPVEEAYR YIRSGVLKHY PSVLHSEDAI EGPLAFAEKR DPVWKGR</pre>  
AALKEIYRTT SEMPVEEAYR YIRSGVLKHY PSVLHSEDAI EGPLAFAEKR DPVWKGR</pre>  
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!align=left {{table heading style}} |Length
!align=left |Length
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297
297
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!align=left {{table heading style}} |Mol. Wt
!align=left |Mol. Wt
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32.311 kDa
32.311 kDa
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!align=left {{table heading style}} |pI
!align=left |pI
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6.2 (calculated)
6.2 (calculated)
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!align=left {{table heading style}} |Extinction coefficient
!align=left |Extinction coefficient
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30,940 - 31,065 (calc based on 6 Y, 4 W, and 1 C residues)
30,940 - 31,065 (calc based on 6 Y, 4 W, and 1 C residues)


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[http://www.uniprot.org/uniprot/P31551#section_features UniProt:P31551]  
[http://www.uniprot.org/uniprot/P31551#section_features UniProt:P31551]  


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<beststructure>
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</beststructure>
</beststructure>
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!align=left {{table heading style}} |Models
!align=left |Models
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View models at:
View models at:
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* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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Revision as of 00:17, 9 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

CaiD

Synonyms

crotonobetainyl CoA hydratase[1], B0036[2][1], YaaL[2][1], CaiD[2][1]

Product description

Carnitine racemase[3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0008152

metabolic process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001753

P

Seeded from EcoCyc [4]

complete

GO:0003824

catalytic activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001753

F

Seeded from EcoCyc [4]

complete

GO:0016829

lyase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0456

F

Seeded from EcoCyc [4]

complete

GO:0016836

hydro-lyase activity

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01051

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

required fields missing

GO:0009310

amine catabolic process

P

Seeded from Riley et al 2006 [1].

required fields missing

GO:0042413

carnitine catabolic process

P

Seeded from EcoCyc 11.1[6].

required fields missing

GO:0008809

carnitine racemase activity

PMID:7815937[7]

EXP: Inferred from Experiment

F

complete

GO:0042413

carnitine catabolic process

PMID:7815937[7]

EXP: Inferred from Experiment

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

truA

PMID:16606699[8]

Experiment(s):EBI-1135386

Protein

sdhA

PMID:16606699[8]

Experiment(s):EBI-1135386

Protein

groL

PMID:16606699[8]

Experiment(s):EBI-1135386

Protein

dnaK

PMID:16606699[8]

Experiment(s):EBI-1135386
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MKQQGTTLPA NNHTLKQYAF FAGMLSSLKK QKWRKGMSES LHLTRNGSIL EITLDRPKAN
AIDAKTSFEM GEVFLNFRDD PQLRVAIITG AGEKFFSAGW DLKAAAEGEA PDADFGPGGF
AGLTEIFNLD KPVIAAVNGY AFGGGFELAL AADFIVCADN ASFALPEAKL GIVPDSGGVL
RLPKILPPAI VNEMVMTGRR MGAEEALRWG IVNRVVSQAE LMDNARELAQ QLVNSAPLAI
AALKEIYRTT SEMPVEEAYR YIRSGVLKHY PSVLHSEDAI EGPLAFAEKR DPVWKGR
Length

297

Mol. Wt

32.311 kDa

pI

6.2 (calculated)

Extinction coefficient

30,940 - 31,065 (calc based on 6 Y, 4 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes

Initiator Methionine

1

Removed

UniProt:P31551

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=caiD taxon=562,83333 </beststructure>

Models

View models at:

edit table

Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:CARNRACE-MONOMER

UniProt (EcoliWiki Page)

UniProt:P31551

PFAM (EcoliWiki Page)

PFAM:PF00378

RefSeq (EcoliWiki Page)

RefSeq:NP_414578


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  4. ↑ 4.0 4.1 4.2 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  5. ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  6. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 Eichler, K et al. (1994) Molecular characterization of the cai operon necessary for carnitine metabolism in Escherichia coli. Mol. Microbiol. 13 775-86 PubMed
  8. ↑ 8.0 8.1 8.2 8.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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