adrA:Gene Product(s): Difference between revisions

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!align=left {{table heading style}} |Standard name
!align=left |Standard name
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YaiC  
YaiC  
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!align=left {{table heading style}} |Synonyms
!align=left |Synonyms
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predicted diguanylate cyclase<ref name='LIB:Riley_2006'/>, AdrA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaiC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0385<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted diguanylate cyclase<ref name='LIB:Riley_2006'/>, AdrA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaiC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0385<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left {{table heading style}} |Product description
!align=left |Product description
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predicted diguanylate cyclase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted diguanylate cyclase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Cellulose, biofilm, motility regulator, diguanylate cyclase; CsgD-regulated; membrane protein<ref name='LIB:EcoGene'/>
Cellulose, biofilm, motility regulator, diguanylate cyclase; CsgD-regulated; membrane protein<ref name='LIB:EcoGene'/>
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!align=left {{table heading style}} |EC number (for enzymes)
!align=left |EC number (for enzymes)
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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complete  
complete  


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!|Partner Type!!Partner!!Notes!!References!!Evidence
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!|Compartment!!Description!!Evidence!!Source!!Notes
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PMID:10760159, PMID:12673057, PMID:16585767
PMID:10760159, PMID:12673057, PMID:16585767
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[http://www.york.ac.uk/res/thomas/Echolocation.cfm?EB_SubLocID=EB1237 EchoLocation:adrA]
[http://www.york.ac.uk/res/thomas/Echolocation.cfm?EB_SubLocID=EB1237 EchoLocation:adrA]
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|-
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!align=left {{table heading style}} |Sequence
!align=left |Sequence
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[http://biocyc.org/ECOLI/sequence-aa?object=EG11257-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=EG11257-MONOMER at EcoCyc]  
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KAGRNRTEVA A</pre>  
KAGRNRTEVA A</pre>  
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!align=left {{table heading style}} |Length
!align=left |Length
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371
371
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!align=left {{table heading style}} |Mol. Wt
!align=left |Mol. Wt
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41.537 kDa
41.537 kDa
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!align=left {{table heading style}} |pI
!align=left |pI
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9.9 (calculated)
9.9 (calculated)
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!align=left {{table heading style}} |Extinction coefficient
!align=left |Extinction coefficient
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80,440 - 80,815 (calc based on 6 Y, 13 W, and 3 C residues)
80,440 - 80,815 (calc based on 6 Y, 13 W, and 3 C residues)


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<beststructure>
<beststructure>
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</beststructure>
</beststructure>
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View models at:
View models at:
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* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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Revision as of 23:55, 8 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YaiC

Synonyms

predicted diguanylate cyclase[1], AdrA[2][1], YaiC[2][1], B0385[2][1]

Product description

predicted diguanylate cyclase[2][3]

Cellulose, biofilm, motility regulator, diguanylate cyclase; CsgD-regulated; membrane protein[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016020

membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc [5]

complete

GO:0016021

integral to membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc [5]

complete

GO:0005886

plasma membrane

GO_REF:0000004
GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003
SP_SL:SL-0039

C

Seeded from EcoCyc [5]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes

membrane

From EcoCyc[3]

Inner Membrane

PMID:10760159[6], PMID:12673057[7], PMID:16585767[8]

EchoLocation:adrA


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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MFPKIMNDEN FFKKAAAHGE EPPLTPQNEH QRSGLRFARR VRLPRAVGLA GMFLPIASTL
VSHPPPGWWW LVLVGWAFVW PHLAWQIASR AVDPLSREIY NLKTDAVLAG MWVGVMGVNV
LPSTAMLMIM CLNLMGAGGP RLFVAGLVLM VVSCLVTLEL TGITVSFNSA PLEWWLSLPI
IVIYPLLFGW VSYQTATKLA EHKRRLQVMS TRDGMTGVYN RRHWETMLRN EFDNCRRHNR
DATLLIIDID HFKSINDTWG HDVGDEAIVA LTRQLQITLR GSDVIGRFGG DEFAVIMSGT
PAESAITAML RVHEGLNTLR LPNTPQVTLR ISVGVAPLNP QMSHYREWLK SADLALYKAK
KAGRNRTEVA A
Length

371

Mol. Wt

41.537 kDa

pI

9.9 (calculated)

Extinction coefficient

80,440 - 80,815 (calc based on 6 Y, 13 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=adrA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11257-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0AAP1

PFAM (EcoliWiki Page)

PFAM:PF05230

RefSeq (EcoliWiki Page)

RefSeq:NP_414919


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ Römling, U et al. (2000) AgfD, the checkpoint of multicellular and aggregative behaviour in Salmonella typhimurium regulates at least two independent pathways. Mol. Microbiol. 36 10-23 PubMed
  7. ↑ Nikolskaya, AN et al. (2003) MASE1 and MASE2: two novel integral membrane sensory domains. J. Mol. Microbiol. Biotechnol. 5 11-6 PubMed
  8. ↑ Da Re, S & Ghigo, JM (2006) A CsgD-independent pathway for cellulose production and biofilm formation in Escherichia coli. J. Bacteriol. 188 3073-87 PubMed

Categories

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