adiC:Gene Product(s): Difference between revisions
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{| | {| id="U46ab1daa7cc91" class=" tableEdit Product_nomenclature_table" | ||
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!align=left | !align=left |Standard name | ||
|| | || | ||
AdiC | AdiC | ||
|- | |- | ||
!align=left | !align=left |Synonyms | ||
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arginine:agmatin<ref name='LIB:Riley_2006'/>, B4115 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjdD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjdE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AdiC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | arginine:agmatin<ref name='LIB:Riley_2006'/>, B4115 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjdD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjdE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AdiC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left |Product description | ||
|| | || | ||
AdiC Arginine:Agmatine Antiporter<ref name='LIB:EcoCyc10.6'/>; AdiC<ref name='LIB:EcoCyc11.1'/>; | AdiC Arginine:Agmatine Antiporter<ref name='LIB:EcoCyc10.6'/>; AdiC<ref name='LIB:EcoCyc11.1'/>; | ||
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Arginine:agmatine antiporter; arginine-dependent acid resistance; acid-inducible membrane protein<ref name='LIB:EcoGene'/> | Arginine:agmatine antiporter; arginine-dependent acid resistance; acid-inducible membrane protein<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left |EC number (for enzymes) | ||
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{| | {| id="X46ab1dac253d1" class=" tableEdit GO_table_product dataTable" | ||
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status | !|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status | ||
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complete | complete | ||
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{| | {| id="P46ab1db792b9b" class=" tableEdit Product_interactions_table" | ||
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{| | {| id="N46ab1db8df4e3" class=" tableEdit Product_localization_table" | ||
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{| | {| id="H46ab1dbb1dadb" class=" tableEdit Product_phys_prop_table" | ||
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!align=left | !align=left |Sequence | ||
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[http://biocyc.org/ECOLI/sequence-aa?object=YJDE-MONOMER at EcoCyc] | [http://biocyc.org/ECOLI/sequence-aa?object=YJDE-MONOMER at EcoCyc] | ||
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TAMYALNYNR LHKNPYPLDA PISKD</pre> | TAMYALNYNR LHKNPYPLDA PISKD</pre> | ||
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!align=left | !align=left |Length | ||
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445 | 445 | ||
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!align=left | !align=left |Mol. Wt | ||
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46.843 kDa | 46.843 kDa | ||
|- | |- | ||
!align=left | !align=left |pI | ||
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9.0 (calculated) | 9.0 (calculated) | ||
|- | |- | ||
!align=left | !align=left |Extinction coefficient | ||
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85,830 - 86,830 (calc based on 17 Y, 11 W, and 8 C residues) | 85,830 - 86,830 (calc based on 17 Y, 11 W, and 8 C residues) | ||
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!align=left | !align=left |Structures | ||
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<beststructure> | <beststructure> | ||
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</beststructure> | </beststructure> | ||
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!align=left | !align=left |Models | ||
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View models at: | View models at: | ||
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* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP) | * [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP) | ||
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Revision as of 23:54, 8 January 2010
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
AdiC |
|---|---|
| Synonyms |
arginine:agmatin[1], B4115 product[2][1], YjdD[2][1], YjdE[2][1], AdiC[2][1] |
| Product description |
AdiC Arginine:Agmatine Antiporter[2]; AdiC[3]; Component of AdiC arginine:agmatine antiporter[3] Arginine:agmatine antiporter; arginine-dependent acid resistance; acid-inducible membrane protein[4] |
| EC number (for enzymes) |
|
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0001101 |
response to acid |
IMP: Inferred from Mutant Phenotype |
P |
Seeded from EcoCyc [6] |
complete | |||
| GO:0016021 |
integral to membrane |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc [6] |
complete | |||
| GO:0016020 |
membrane |
IEA: Inferred from Electronic Annotation |
InterPro:IPR002293 |
C |
Seeded from EcoCyc 12.5 [7] |
complete | ||
| GO:0015171 |
amino acid transmembrane transporter activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [6] |
complete | |||
| GO:0006865 |
amino acid transport |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [6] |
complete | |||
| GO:0006810 |
transport |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [6] |
complete | |||
| GO:0015300 |
solute:solute antiporter activity |
IDA: Inferred from Direct Assay |
F |
Seeded from EcoCyc [6] |
complete | |||
| GO:0051454 |
intracellular pH elevation |
IMP: Inferred from Mutant Phenotype |
P |
Seeded from EcoCyc [6] |
complete | |||
| GO:0015292 |
uniporter activity |
F |
Seeded from EcoCyc 10.6[2]. |
required fields missing | ||||
| GO:0005886 |
plasma membrane |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0997 |
C |
Seeded from EcoCyc [6] |
complete | ||
| GO:0015297 |
antiporter activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [6] |
complete | |||
| GO:0051454 |
intracellular pH elevation |
IMP: Inferred from Mutant Phenotype |
P |
Seeded from EcoCyc 11.1[3]. |
complete | |||
| GO:0015300 |
solute:solute antiporter activity |
IDA: Inferred from Direct Assay |
F |
Seeded from EcoCyc 11.1[3]. |
complete | |||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
Subunits of AdiC arginine:agmatine antiporter |
could be indirect |
| |
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Source | Notes |
|---|---|---|---|---|
|
plasma membrane |
C-terminus localized in the cytoplasm with 11 predicted transmembrane domains |
Daley et al. (2005) [9] |
||
|
plasma membrane |
From EcoCyc[3] |
| ||
| edit table |
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MSSDADAHKV GLIPVTLMVS GNIMGSGVFL LPANLASTGG IAIYGWLVTI IGALGLSMVY AKMSFLDPSP GGSYAYARRC FGPFLGYQTN VLYWLACWIG NIAMVVIGVG YLSYFFPILK DPLVLTITCV VVLWIFVLLN IVGPKMITRV QAVATVLALI PIVGIAVFGW FWFRGETYMA AWNVSGLGTF GAIQSTLNVT LWSFIGVESA SVAAGVVKNP KRNVPIATIG GVLIAAVCYV LSTTAIMGMI PNAALRVSAS PFGDAARMAL GDTAGAIVSF CAAAGCLGSL GGWTLLAGQT AKAAADDGLF PPIFARVNKA GTPVAGLIIV GILMTIFQLS SISPNATKEF GLVSSVSVIF TLVPYLYTCA ALLLLGHGHF GKARPAYLAV TTIAFLYCIW AVVGSGAKEV MWSFVTLMVI TAMYALNYNR LHKNPYPLDA PISKD |
|---|---|
| Length |
445 |
| Mol. Wt |
46.843 kDa |
| pI |
9.0 (calculated) |
| Extinction coefficient |
85,830 - 86,830 (calc based on 17 Y, 11 W, and 8 C residues) |
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
|
Structure
|
Structure figures
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 Gong, S et al. (2003) YjdE (AdiC) is the arginine:agmatine antiporter essential for arginine-dependent acid resistance in Escherichia coli. J. Bacteriol. 185 4402-9 PubMed
- ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
- ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 8.0 8.1 Fang, Y et al. (2007) A bacterial arginine-agmatine exchange transporter involved in extreme acid resistance. J Biol Chem 282 176-82 PubMed
- ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
Categories
- GO:0001101 ! response to acid chemical
- GO:0016021 ! integral component of membrane
- GO:0016020 ! membrane
- GO:0015171 ! amino acid transmembrane transporter activity
- GO:0006865 ! amino acid transport
- GO:0006810 ! transport
- GO:0015300 ! solute:solute antiporter activity
- GO:0051454 ! intracellular pH elevation
- GO:0015292 ! uniporter activity
- GO:0005886 ! plasma membrane
- GO:0015297 ! antiporter activity
- TMHMM Prediction
- Proteins
- GO:0051454 ! cellular pH elevation
- Complex:AdiC arginine:agmatine antiporter
- Location:plasma membrane
