Mauve: Difference between revisions
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== User notes == | == User notes == | ||
* Uses a heuristic anchor-based approach to find local matches, then extending them to a global alignment. | |||
* Relaxes the criteria that the genomes be colinear | |||
* [http://ingeno.bioapps.biozentrum.uni-wuerzburg.de/ inGeno] looks like a similar program. Not sure about the differences in methods, though. <br />--[[User:DanielRenfro|Daniel]] 19:11, 8 April 2009 (UTC) | * [http://ingeno.bioapps.biozentrum.uni-wuerzburg.de/ inGeno] looks like a similar program. Not sure about the differences in methods, though. <br />--[[User:DanielRenfro|Daniel]] 19:11, 8 April 2009 (UTC) | ||
Revision as of 19:41, 24 November 2009
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| Link/URL: | |
|---|---|
| What: |
Constructs multiple genome alignments in the presence of large-scale evolutionary events |
| Who: |
The University of Wisconsin - Madison |
| edit table |
Short Description
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Mauve is a multiple-genome alignment program and visualizer.
"Mauve is a software
package that attempts to align orthologous and xenologous regions among two or more genome sequences that have undergone
both local and large-scale changes."[1]
Links
Mauve at the Genome Evolution Laboratory: http://gel.ahabs.wisc.edu/mauve/
Requirements
Mauve pre-built binaries are available for Windows, Mac OS X (10.4+), and Linux. You can also download the source code and compile a version yourself.
User notes
- Uses a heuristic anchor-based approach to find local matches, then extending them to a global alignment.
- Relaxes the criteria that the genomes be colinear
- inGeno looks like a similar program. Not sure about the differences in methods, though.
--Daniel 19:11, 8 April 2009 (UTC)
See Also
References
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