ilvB:Gene Product(s): Difference between revisions

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Revision as of 18:48, 8 October 2009

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

IlvB

Synonyms

acetolactate synthase I, large subunit[1], B3671[2][1], IlvB[2][1]

Product description

IlvB[2][3];

Component of acetohydroxybutanoate synthase I[2]

Acetohydroxy acid synthase I (AHAS-I); acetolactate synthase I (ALS-I); valine sensitive; large subunit[4]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0003984

acetolactate synthase activity

PMID:16326011[5]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0004802

transketolase activity

PMID:370104[7]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc [8]

complete

GO:0005948

acetolactate synthase complex

PMID:6360995[9]

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc [8]

complete

GO:0009097

isoleucine biosynthetic process

PMID:370104[7]

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc [8]

complete

GO:0009099

valine biosynthetic process

PMID:16326011[5]

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc [8]

complete

GO:0000287

magnesium ion binding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000399
InterPro:IPR012000
InterPro:IPR012846
SP_KW:KW-0460

F

Seeded from EcoCyc [8]

complete

GO:0003984

acetolactate synthase activity

GO_REF:0000002
GO_REF:0000003

IEA: Inferred from Electronic Annotation

InterPro:IPR012846
EC:2.2.1.6

F

Seeded from EcoCyc 12.5 [6]

complete

GO:0030976

thiamin pyrophosphate binding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000399
InterPro:IPR011766
InterPro:IPR012000
InterPro:IPR012001
InterPro:IPR012846

F

Seeded from EcoCyc [8]

complete

GO:0046872

metal ion binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc [8]

complete

GO:0050660

FAD binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012846

F

Seeded from EcoCyc [8]

complete

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

required fields missing

GO:0003824

catalytic activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011766

F

Seeded from EcoCyc [8]

complete

GO:0008652

amino acid biosynthetic process

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0028

P

Seeded from EcoCyc [8]

complete

GO:0009082

branched chain family amino acid biosynthetic process

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR012846
SP_KW:KW-0100

P

Seeded from EcoCyc [8]

complete

GO:0016740

transferase activity

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000399
SP_KW:KW-0808

F

Seeded from EcoCyc [8]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of acetohydroxybutanoate synthase I

could be indirect

Protein

aceE

PMID:15690043[10]

Experiment(s):EBI-880536, EBI-886364

Protein

lpdA

PMID:15690043[10]

Experiment(s):EBI-880536, EBI-886364

Protein

fumA

PMID:15690043[10]

Experiment(s):EBI-886364

Protein

rplL

PMID:15690043[10]

Experiment(s):EBI-886364

Protein

rplM

PMID:15690043[10]

Experiment(s):EBI-886364

Protein

rpsB

PMID:15690043[10]

Experiment(s):EBI-886364

Protein

lpxK

PMID:15690043[10]

Experiment(s):EBI-886364

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MASSGTTSTR KRFTGAEFIV HFLEQQGIKI VTGIPGGSIL PVYDALSQST QIRHILARHE
QGAGFIAQGM ARTDGKPAVC MACSGPGATN LVTAIADARL DSIPLICITG QVPASMIGTD
AFQEVDTYGI SIPITKHNYL VRHIEELPQV MSDAFRIAQS GRPGPVWIDI PKDVQTAVFE
IETQPAMAEK AAAPAFSEES IRDAAAMINA AKRPVLYLGG GVINAPARVR ELAEKAQLPT
TMTLMALGML PKAHPLSLGM LGMHGVRSTN YILQEADLLI VLGARFDDRA IGKTEQFCPN
AKIIHVDIDR AELGKIKQPH VAIQADVDDV LAQLIPLVEA QPRAEWHQLV ADLQREFPCP
IPKACDPLSH YGLINAVAAC VDDNAIITTD VGQHQMWTAQ AYPLNRPRQW LTSGGLGTMG
FGLPAAIGAA LANPDRKVLC FSGDGSLMMN IQEMATASEN QLDVKIILMN NEALGLVHQQ
QSLFYEQGVF AATYPGKINF MQIAAGFGLE TCDLNNEADP QASLQEIINR PGPALIHVRI
DAEEKVYPMV PPGAANTEMV GE
Length

562

Mol. Wt

60.441 kDa

pI

5.3 (calculated)

Extinction coefficient

36,900 - 38,025 (calc based on 10 Y, 4 W, and 9 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ilvB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:LARGEILVB-MONOMER

UniProt (EcoliWiki Page)

UniProt:P08142

PFAM (EcoliWiki Page)

PFAM:PF02776

RefSeq (EcoliWiki Page)

RefSeq:NP_418127


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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Vinogradov, V et al. (2006) Acetohydroxyacid synthase isozyme I from Escherichia coli has unique catalytic and regulatory properties. Biochim Biophys Acta 1760 356-63 PubMed
  6. ↑ 6.0 6.1 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. ↑ 7.0 7.1 Grimminger, H & Umbarger, HE (1979) Acetohydroxy acid synthase I of Escherichia coli: purification and properties. J Bacteriol 137 846-53 PubMed
  8. ↑ 8.00 8.01 8.02 8.03 8.04 8.05 8.06 8.07 8.08 8.09 8.10 8.11 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  9. ↑ Eoyang, L & Silverman, PM (1984) Purification and subunit composition of acetohydroxyacid synthase I from Escherichia coli K-12. J Bacteriol 157 184-9 PubMed
  10. ↑ 10.0 10.1 10.2 10.3 10.4 10.5 10.6 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed

Categories

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