ykfJ:Gene Product(s): Difference between revisions
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!align=left {{table heading style}} |Structures | !align=left {{table heading style}} |Structures | ||
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<beststructure>ykfJ | <beststructure> | ||
562</beststructure> | gene=ykfJ | ||
taxon=562,83333 | |||
</beststructure> | |||
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!align=left {{table heading style}} |Models | !align=left {{table heading style}} |Models | ||
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View models at: | View models at: | ||
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q= | * [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict] | ||
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue= | * [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase] | ||
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED] | * [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED] | ||
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS) | * [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS) | ||
Revision as of 00:14, 26 August 2009
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
YkfJ |
|---|---|
| Synonyms | |
| Product description | |
| EC number (for enzymes) |
|
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
btuD |
Experiment(s):EBI-1135979 | ||
|
Protein |
rpmB |
Experiment(s):EBI-1135979 | ||
|
Protein |
groL |
Experiment(s):EBI-1135979 | ||
|
Protein |
rplB |
Experiment(s):EBI-1135979 | ||
|
Protein |
ybiI |
Experiment(s):EBI-1135979 | ||
|
Protein |
yfiM |
Experiment(s):EBI-1135979 | ||
|
Protein |
chaB |
Experiment(s):EBI-1135979 | ||
|
Protein |
rpsI |
Experiment(s):EBI-1135979 | ||
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
| edit table |
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MEWYMGKYIR PLSDAVFTIA SDDLWIESLA IQQLHTTANL PNMQRVVGMP DLHPGRGYPI GAAFFSVGRF YPARRRGNGA GNRNGPLL |
|---|---|
| Length |
88 |
| Mol. Wt |
9.82 kDa |
| pI |
10.2 (calculated) |
| Extinction coefficient |
16,960 (calc based on 4 Y, 2 W, and C residues) |
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
|
Structure
|
Structure figures
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
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