rihC:Gene Product(s): Difference between revisions

Standard name	RihC
Synonyms	ribonucleoside hydrolase 3^[1], YaaF^[2]^[1], RihC^[2]^[1], B0030^[2]^[1]
Product description	ribonucleoside hydrolase 3^[2]^[3] Ribonucleoside hydrolase^[4]
EC number (for enzymes)	3.2.2.-^[1]
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0016798	hydrolase activity, acting on glycosyl bonds	GO_REF:0000004 GO_REF:0000020	IEA: Inferred from Electronic Annotation	SP_KW:KW-0326 HAMAP:MF_01432	F	Seeded from EcoCyc 12.5 ^[5]	complete
	GO:0016787	hydrolase activity	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0378	F	Seeded from EcoCyc ^[6]	complete
	GO:0008152	metabolic process	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0326	P	Seeded from EcoCyc ^[6]	complete
	GO:0006206	pyrimidine base metabolic process	GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01432	P	Seeded from EcoCyc ^[6]	complete
	GO:0006144	purine base metabolic process	GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01432	P	Seeded from EcoCyc ^[6]	complete
	GO:0005737	cytoplasm				C	Seeded from Riley et al 2006 ^[1].	required fields missing
	GO:0006144	purine base metabolic process	GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01432	P	Seeded from EcoCyc	complete
	GO:0006206	pyrimidine base metabolic process	GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01432	P	Seeded from EcoCyc	complete
	GO:0008152	metabolic process	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0326	P	Seeded from EcoCyc	complete
	GO:0016787	hydrolase activity	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0378	F	Seeded from EcoCyc	complete
	GO:0016798	hydrolase activity, acting on glycosyl bonds	GO_REF:0000020 GO_REF:0000004	IEA: Inferred from Electronic Annotation	HAMAP:MF_01432 SP_KW:KW-0326	F	Seeded from EcoCyc	complete
	GO:0009226	nucleotide-sugar biosynthetic process				P	Seeded from Riley et al 2006 ^[1].	required fields missing
	GO:0015949	nucleobase, nucleoside and nucleotide interconversion				P	Seeded from EcoCyc 11.1^[3].	required fields missing
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence	at EcoCyc MRLPIFLDTD PGIDDAVAIA AAIFAPELDL QLMTTVAGNV SVEKTTRNAL QLLHFWNAEI PLAQGAAVPL VRAPRDAASV HGESGMAGYD FVEHNRKPLG IPAFLAIRDA LMRAPEPVTL VAIGPLTNIA LLLSQCPECK PYIRRLVIMG GSAGRGNCTP NAEFNIAADP EAAACVFRSG IEIVMCGLDV TNQAILTPDY LSTLPQLNRT GKMLHALFSH YRSGSMQSGL RMHDLCAIAW LVRPDLFTLK PCFVAVETQG EFTSGTTVVD IDGCLGKPAN VQVALDLDVK GFQQWVAEVL ALAS
Length	304
Mol. Wt	32.56 kDa
pI	5.2 (calculated)
Extinction coefficient	22,460 - 23,460 (calc based on 4 Y, 3 W, and 8 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes
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<motif_map/>

Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

Models

View models at:

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:EG11082-MONOMER
SwissModel (EcoliWiki Page)	SwissModel:P22564
UniProt (EcoliWiki Page)	UniProt:P22564
PFAM (EcoliWiki Page)	PFAM:PF01156
RefSeq (EcoliWiki Page)	RefSeq:NP_414571
ModBase (EcoliWiki Page)	ModBase:P22564
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^6.0 ^6.1 ^6.2 ^6.3 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70

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 ==References==
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 __NOTOC__
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 ===Categories===
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 [[Category:Proteins]]
 [[Category:GO:0005737_!_cytoplasm]][[Category:GO:0009226_!_nucleotide-sugar biosynthetic process]][[Category:GO:0015949_!_nucleobase, nucleoside and nucleotide interconversion]]

rihC:Gene Product(s): Difference between revisions

Revision as of 20:44, 26 June 2009

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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