Cis Element:Phage lambda attL: Difference between revisions
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===Notes=== | ===Notes=== | ||
The sequence of [http://www.ncbi.nlm.nih.gov/nuccore/215190?ordinalpos=1&itool=EntrezSystem2.PEntrez.Sequence.Sequence_ResultsPanel.Sequence_RVDocSum attL] is: | The sequence of [http://www.ncbi.nlm.nih.gov/nuccore/215190?ordinalpos=1&itool=EntrezSystem2.PEntrez.Sequence.Sequence_ResultsPanel.Sequence_RVDocSum attL] is: | ||
1 CCTGCTTTTT TATACTAAGT TGGCATTATA AAAAAGCATT GCTTATCAAT TTGTTGCAAC GAACAGGTCA CTATCAGTCA AAATAAAATC ATTATTTGAT T 101 | <b>1 CCTGCTTTTT TATACTAAGT TGGCATTATA AAAAAGCATT GCTTATCAAT TTGTTGCAAC GAACAGGTCA CTATCAGTCA AAATAAAATC ATTATTTGAT T 101 </b> | ||
== Interactions== | == Interactions== | ||
Revision as of 16:38, 24 June 2009
Cis element summary table
| Standard Name |
lambda attL |
|---|---|
| Synonyms |
Left prophage att site |
| Function |
DNA sequence at left end of integrated prophage lambda genome that mediate synapsis and strand exchange along with attR site (right end of lambda genome). |
| Location |
In the linear sequence of the lambda genome (NC_001416), the sequence position is: nt 27,724 - 27,781 The position in the E. coli genome: |
| SO terms |
|
| edit table |
Notes
In the free phage, the att site is referred to as attP (phage attachment site) while the corresponding site in a host genome is called attB (bacterial attachment site). After integration occurs to create a prophage, these sites are then known as attL (left end of prophage) and attR (right end of prophage). Reviewed in Lambda II.[1]
Location and Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
| edit table |
Notes
The sequence of attL is:
1 CCTGCTTTTT TATACTAAGT TGGCATTATA AAAAAGCATT GCTTATCAAT TTGTTGCAAC GAACAGGTCA CTATCAGTCA AAATAAAATC ATTATTTGAT T 101
Interactions
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
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Notes
Mutant alleles and phenotypes
| Allele | Nt change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
| edit table |
Notes
Accessions
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
| edit table |
Notes
References
See Help:References for how to manage references in EcoliWiki.
- ↑ Edited by Roger W. Hendrix, Jeffrey W. Roberts, Franklin W. Stahl and Robert A. Weisberg (1983) Lambda II (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY)