WormBase: Difference between revisions
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==About {{PAGENAME}}== | |||
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Wormbase provides information about the genetics, genomics and biology of C. elegans and some related nematodes. | Wormbase provides information about the genetics, genomics and biology of C. elegans and some related nematodes. | ||
=Content= | ==Content== | ||
Sequences | Sequences | ||
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Downloads and Data Mning | Downloads and Data Mning | ||
=Using {{PAGENAME}}= | ==Using {{PAGENAME}}== | ||
==Browsing== | ====Browsing==== | ||
==Searching== | ====Searching==== | ||
Right when you get to the home page, you may search by: | Right when you get to the home page, you may search by: | ||
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:*Y2H interaction | :*Y2H interaction | ||
==Usage examples== | ====Usage examples==== | ||
''Add links to additional pages describing success stories here.'' | ''Add links to additional pages describing success stories here.'' | ||
=Other sites with related content= | ==Other sites with related content== | ||
=Technology= | ==Technology== | ||
==Web Services/API== | ====Web Services/API==== | ||
=Discussion= | ==Discussion== | ||
=References= | ==References== | ||
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'''WormBase: better software, richer content''' | '''WormBase: better software, richer content''' | ||
Erich M. Schwarz1, ''et al'' (2006). | Erich M. Schwarz1, ''et al'' (2006). | ||
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Nucleic Acids Research 29:82-86 | Nucleic Acids Research 29:82-86 | ||
=External Links= | ==External Links== | ||
[http://www.wormbase.org {{PAGENAME}}] URL: http://www.wormbase.org | [http://www.wormbase.org {{PAGENAME}}] URL: http://www.wormbase.org | ||
==Discussion of {{PAGENAME}} on other websites== | ====Discussion of {{PAGENAME}} on other websites==== | ||
Revision as of 03:36, 2 June 2009
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About WormBase
Wormbase provides information about the genetics, genomics and biology of C. elegans and some related nematodes.
Content
Sequences
- C. elegans genome
- C. briggsae genome
- Gene Ontology
- BLAST/ BLAT
- e-PCR
- Synteny Viewer
- Cis Elements (Cis-ortho)
Cells and Gene Expression
- Cell and Pedigree
- Neurons
- Expressoin Pattern
- Expression Profile
Genetic Strans and Phenotypes
- Genetic Interval
- Rearrangements
- Clone
- Alleles
- SNPs
- Markers
- Strains and Strain Reports
- RNAi
Downloads and Data Mning
Using WormBase
Browsing
Searching
Right when you get to the home page, you may search by:
- any gene
- author
- allele
- cell
- clone
- database model
- GO term
- gene class
- genetic map
- Genbank accession number
- literature search
- microarray expression experiment
- operon
- primer pair
- any protein
- protein family or motif
- RNAi experiment
- any sequence
- strains
- Y2H interaction
Usage examples
Add links to additional pages describing success stories here.
Technology
Web Services/API
Discussion
References
See Help:References for how to manage references in EcoliWiki.
WormBase: better software, richer content Erich M. Schwarz1, et al (2006). Nucleic Acis Research 34:D475-D478
WormBase: a comprehensive data resource for Caenorhabditis biology and genomics Nansheng Chen, et al (2005). Nucleic Acids Research 33:D383-D389
WormBase: a multi-species resource for nematode biology and genomics Todd W. Harris, et al (2004). Nucleic Acids Research 32:D411-D417
WormBase: a cross-species database for comparative genomics Todd W. Harris, et al (2003). Nucleic Acids Research 31:133-137
WormBase: network access to the genome and biology of Caenorhabditis elegans Lincoln D. Stein, Paul Sternberg, Richard Durbin, Jean Thierry-Mieg, and John Spieth (2001). Nucleic Acids Research 29:82-86
External Links
WormBase URL: http://www.wormbase.org