WormBase

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Link/URL:

http://wormbase.org/

What:

C. elegans genome information

Who:
Updates:
Upcoming events:
Web Services:

RSS feeds:


edit table

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About WormBase

Wormbase provides information about the genetics, genomics and biology of C. elegans and some related nematodes.

Content

Sequences

  • C. elegans genome
  • C. briggsae genome
  • Gene Ontology
  • BLAST/ BLAT
  • e-PCR
  • Synteny Viewer
  • Cis Elements (Cis-ortho)

Cells and Gene Expression

  • Cell and Pedigree
  • Neurons
  • Expressoin Pattern
  • Expression Profile

Genetic Strans and Phenotypes

  • Genetic Interval
  • Rearrangements
  • Clone
  • Alleles
  • SNPs
  • Markers
  • Strains and Strain Reports
  • RNAi


Downloads and Data Mning

Using WormBase

Browsing

Searching

Right when you get to the home page, you may search by:

  • any gene
  • author
  • allele
  • cell
  • clone
  • database model
  • GO term
  • gene class
  • genetic map
  • Genbank accession number
  • literature search
  • microarray expression experiment
  • operon
  • primer pair
  • any protein
  • protein family or motif
  • RNAi experiment
  • any sequence
  • strains
  • Y2H interaction

Usage examples

Add links to additional pages describing success stories here.

Other sites with related content

Technology

Web Services/API

Discussion

References

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See Help:References for how to manage references in EcoliWiki.

WormBase: better software, richer content Erich M. Schwarz1, et al (2006). Nucleic Acis Research 34:D475-D478

WormBase: a comprehensive data resource for Caenorhabditis biology and genomics Nansheng Chen, et al (2005). Nucleic Acids Research 33:D383-D389

WormBase: a multi-species resource for nematode biology and genomics Todd W. Harris, et al (2004). Nucleic Acids Research 32:D411-D417

WormBase: a cross-species database for comparative genomics Todd W. Harris, et al (2003). Nucleic Acids Research 31:133-137

WormBase: network access to the genome and biology of Caenorhabditis elegans Lincoln D. Stein, Paul Sternberg, Richard Durbin, Jean Thierry-Mieg, and John Spieth (2001). Nucleic Acids Research 29:82-86

External Links

WormBase URL: http://www.wormbase.org

Discussion of WormBase on other websites

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