ydeH:Gene Product(s): Difference between revisions
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negative regulation of flagellum assembly | negative regulation of flagellum assembly | ||
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PMID:18713317 | |||
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IMP: Inferred from Mutant Phenotype | |||
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P | |||
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Seeded from EcoCyc | |||
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complete | |||
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GO:0051271 | |||
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negative regulation of cell motion | |||
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PMID:18713317 | PMID:18713317 | ||
Revision as of 08:43, 22 May 2009
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
YdeH |
|---|---|
| Synonyms | |
| Product description |
Probable diguanylate cyclase, function unknown[4] |
| EC number (for enzymes) |
|
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0043789 |
diguanylate cyclase activity |
IDA: Inferred from Direct Assay |
F |
Seeded from EcoCyc [6] |
complete | |||
| GO:0045718 |
negative regulation of flagellum assembly |
IMP: Inferred from Mutant Phenotype |
P |
Seeded from EcoCyc [6] |
complete | |||
| GO:0051271 |
negative regulation of cell motion |
IMP: Inferred from Mutant Phenotype |
P |
Seeded from EcoCyc [6] |
complete | |||
| GO:0043789 |
diguanylate cyclase activity |
IDA: Inferred from Direct Assay |
F |
Seeded from EcoCyc |
complete | |||
| GO:0045718 |
negative regulation of flagellum assembly |
IMP: Inferred from Mutant Phenotype |
P |
Seeded from EcoCyc |
complete | |||
| GO:0051271 |
negative regulation of cell motion |
IMP: Inferred from Mutant Phenotype |
P |
Seeded from EcoCyc |
complete | |||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
dld |
Experiment(s):EBI-1140066 | ||
|
Protein |
groL |
Experiment(s):EBI-1140066 | ||
|
Protein |
ptsI |
Experiment(s):EBI-1140066 | ||
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
| edit table |
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MIKKTTEIDA ILLNLNKAID AHYQWLVSMF HSVVARDASK PEITDNHSYG LCQFGRWIDH LGPLDNDELP YVRLMDSAHQ HMHNCGRELM LAIVENHWQD AHFDAFQEGL LSFTAALTDY KIYLLTIRSN MDVLTGLPGR RVLDESFDHQ LRNAEPLNLY LMLLDIDRFK LVNDTYGHLI GDVVLRTLAT YLASWTRDYE TVYRYGGEEF IIIVKAANDE EACRAGVRIC QLVDNHAITH SEGHINITVT AGVSRAFPEE PLDVVIGRAD RAMYEGKQTG RNRCMFIDEQ NVINRV |
|---|---|
| Length |
296 |
| Mol. Wt |
33.86 kDa (calc) [2] |
| pI | |
| Extinction coefficient |
39880 - 40505 (calc based on 12 Y, 4 W, and 5 C residues) |
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
| Structures |
<beststructure>ydeH 562</beststructure> |
|---|---|
| Models |
View models at: |
| edit table |
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 5.3 5.4 5.5 Jonas, K et al. (2008) The RNA binding protein CsrA controls cyclic di-GMP metabolism by directly regulating the expression of GGDEF proteins. Mol. Microbiol. 70 236-57 PubMed
- ↑ 6.0 6.1 6.2 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
- ↑ 7.0 7.1 7.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
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