nrdI:Gene Product(s): Difference between revisions
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/> | Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/> | ||
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complete | |||
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GO:0006464 | |||
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protein modification process | |||
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PMID:18799738 | |||
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IDA: Inferred from Direct Assay | |||
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P | |||
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Seeded from EcoCyc | |||
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complete | complete | ||
Revision as of 03:29, 22 May 2009
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
NrdI |
|---|---|
| Synonyms |
protein that stimulates ribonucleotide reduction[1], B2674[2][1], YgaO[2][1], NrdI[2][1] |
| Product description |
conserved protein that may stimulate ribonucleotide reductase[2][3] Part of nrdHIEF operon, function unknown; stimulatory effect on ribonucleotide reduction; non-essential gene[4] |
| EC number (for enzymes) |
|
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0015949 |
nucleobase, nucleoside and nucleotide interconversion |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0006464 |
protein modification process |
IDA: Inferred from Direct Assay |
P |
Seeded from EcoCyc [6] |
complete | |||
| GO:0010181 |
FMN binding |
IDA: Inferred from Direct Assay |
F |
Seeded from EcoCyc [6] |
complete | |||
| GO:0006464 |
protein modification process |
IDA: Inferred from Direct Assay |
P |
Seeded from EcoCyc |
complete | |||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
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Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MSQLVYFSSS SENTQRFIER LGLPAVRIPL NERERIQVDE PYILIVPSYG GGGTAGAVPR QVIRFLNDEH NRALLRGVIA SGNRNFGEAY GRAGDVIARK CGVPWLYRFE LMGTQSDIEN VRKGVTEFWQ RQPQNA |
|---|---|
| Length |
136 |
| Mol. Wt |
15.34 kDa (calc) [2] |
| pI | |
| Extinction coefficient |
18450 - 18575 (calc based on 5 Y, 2 W, and 1 C residues) |
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Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
| Structures |
<beststructure>nrdI 562</beststructure> |
|---|---|
| Models |
View models at: |
| edit table |
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
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| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 Cotruvo, JA Jr & Stubbe, J (2008) NrdI, a flavodoxin involved in maintenance of the diferric-tyrosyl radical cofactor in Escherichia coli class Ib ribonucleotide reductase. Proc Natl Acad Sci U S A 105 14383-8 PubMed
- ↑ 6.0 6.1 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
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