afuC:Gene Product(s): Difference between revisions

Standard name	AfuC
Synonyms	CP4-6 prophage; predicted ferric transporter subunit^[1], ATP-binding component of ABC superfamily^[1], B0262^[2]^[1], YagC^[2]^[1], AfuC^[2]^[1], FbpC^[2]^[1]
Product description	CP4-6 prophage; predicted ferric transporter subunit/ATP-binding component of ABC superfamily^[2]^[3] Function unknown, CP4-6 putative prophage remnant; homologous to an iron-uptake system gene in Actinobacillus; putative peripheral cytoplasmic membrane protein component^[4]
EC number (for enzymes)
edit table

Notes

Function

[back to top]

Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0000166	nucleotide binding	GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR003593 SP_KW:KW-0547	F	Seeded from EcoCyc ^[5]	complete
	GO:0005215	transporter activity	GO_REF:0000002 GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR008995 InterPro:IPR013611	F	Seeded from EcoCyc 12.5 ^[6]	complete
	GO:0005506	iron ion binding	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0408	F	Seeded from EcoCyc ^[5]	complete
	GO:0005524	ATP binding	GO_REF:0000002 GO_REF:0000002 GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR003439 InterPro:IPR008995 InterPro:IPR013611 SP_KW:KW-0067	F	Seeded from EcoCyc 12.5 ^[6]	complete
	GO:0006810	transport	GO_REF:0000002 GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR008995 InterPro:IPR013611 SP_KW:KW-0813	P	Seeded from EcoCyc 12.5 ^[6]	complete
	GO:0006811	ion transport	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0406	P	Seeded from EcoCyc ^[5]	complete
	GO:0006826	iron ion transport	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0410	P	Seeded from EcoCyc ^[5]	complete
	GO:0015408	ferric-transporting ATPase activity	GO_REF:0000003 GO_REF:0000020	IEA: Inferred from Electronic Annotation	EC:3.6.3.30 HAMAP:MF_01706	F	Seeded from EcoCyc 12.5 ^[6]	complete
	GO:0015682	ferric iron transport	GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01706	P	Seeded from EcoCyc ^[5]	complete
	GO:0016020	membrane	GO_REF:0000004 GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0397 SP_KW:KW-0472	C	Seeded from EcoCyc 12.5 ^[6]	complete
	GO:0016787	hydrolase activity	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0378	F	Seeded from EcoCyc ^[5]	complete
	GO:0016820	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	GO_REF:0000002 GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR008995 InterPro:IPR013611	F	Seeded from EcoCyc ^[5]	complete
	GO:0016887	ATPase activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003439	F	Seeded from EcoCyc 12.5 ^[6]	complete
	GO:0017111	nucleoside-triphosphatase activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003593	F	Seeded from EcoCyc ^[5]	complete
	GO:0043190	ATP-binding cassette (ABC) transporter complex	GO_REF:0000002 GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR008995 InterPro:IPR013611	C	Seeded from EcoCyc ^[5]	complete
	GO:0005886	plasma membrane	GO_REF:0000004 GO_REF:0000004 GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_KW:KW-0997 SP_KW:KW-1003 SP_SL:SL-0037	C	Seeded from EcoCyc ^[5]	complete
	GO:0000166	nucleotide binding	GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR003593 SP_KW:KW-0547	F	Seeded from EcoCyc	complete
	GO:0005215	transporter activity	GO_REF:0000002 GO_REF:0000002 GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR008995 InterPro:IPR013611 InterPro:IPR015853	F	Seeded from EcoCyc	complete
	GO:0005506	iron ion binding	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0408	F	Seeded from EcoCyc	complete
	GO:0005524	ATP binding	GO_REF:0000002 GO_REF:0000002 GO_REF:0000002 GO_REF:0000002 GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR003439 InterPro:IPR008995 InterPro:IPR013611 InterPro:IPR015853 InterPro:IPR017871 SP_KW:KW-0067	F	Seeded from EcoCyc	complete
	GO:0005886	plasma membrane	GO_REF:0000004 GO_REF:0000004 GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_KW:KW-0997 SP_KW:KW-1003 SP_SL:SL-0037	C	Seeded from EcoCyc	complete
	GO:0006810	transport	GO_REF:0000002 GO_REF:0000002 GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR008995 InterPro:IPR013611 InterPro:IPR015853 SP_KW:KW-0813	P	Seeded from EcoCyc	complete
	GO:0006811	ion transport	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0406	P	Seeded from EcoCyc	complete
	GO:0006826	iron ion transport	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0410	P	Seeded from EcoCyc	complete
	GO:0015408	ferric-transporting ATPase activity	GO_REF:0000020 GO_REF:0000003	IEA: Inferred from Electronic Annotation	HAMAP:MF_01706 EC:3.6.3.30	F	Seeded from EcoCyc	complete
	GO:0015682	ferric iron transport	GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01706	P	Seeded from EcoCyc	complete
	GO:0016020	membrane	GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR015853 SP_KW:KW-0472	C	Seeded from EcoCyc	complete
	GO:0016787	hydrolase activity	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0378	F	Seeded from EcoCyc	complete
	GO:0016820	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	GO_REF:0000002 GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR008995 InterPro:IPR013611	F	Seeded from EcoCyc	complete
edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	Q79BD2	PMID:16606699^[7]	Experiment(s):EBI-1136030
Protein	groL	PMID:16606699^[7]	Experiment(s):EBI-1136030
Protein	modB	PMID:16606699^[7]	Experiment(s):EBI-1136030
edit table

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Notes
cytoplasm			From EcoCyc^[3]
edit table

Notes

Structure and Physical Properties

[back to top]

Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence	at EcoCyc MERTMTQKNF VELRNVTKRF GSNTVIDNIN LTIPQGQMVT LLGPSGCGKT TILRLVAGLE KPSEGQIFID GEDVTHRSIQ QRDICMVFQS YALFPHMSLG ENVGYGLKML GVPRAELKAR VKEALAMVDL EGFEDRFVDQ ISGGQQQRVA LARALILKPK VLLFDEPLSN LDANLRRSMR DKIRELQKQF DITSLYVTHD QSEAFAVSDT VLVMNKGHIM QIGSPQDLYR QPASRFMASF MGDANLFPAT FSDGYVDIYG YHLPRPLHFG TQGEGMVGVR PEAITLSDRG EESQRCVIRH VAYMGPQYEV TVEWHGQEIL LQVNATRLQP DVGEQYYLEI HPYGMFVLAD AA
Length	352
Mol. Wt	39.06 kDa (calc) ^[2]
pI
Extinction coefficient	23380 - 23755 (calc based on 12 Y, 1 W, and 3 C residues)
edit table

Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes
Domain	7 - 237	ABC transporter	UniProt:P37009
edit table

<motif_map/>

Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

Models

View models at:

edit table

Notes

Gene Product Resources

[back to top]

See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
edit table

Notes

Accessions in Other Databases

[back to top]

See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:YAGC-MONOMER
SwissModel (EcoliWiki Page)	SwissModel:P37009
UniProt (EcoliWiki Page)	UniProt:P37009
PFAM (EcoliWiki Page)	PFAM:PF00005
RefSeq (EcoliWiki Page)	RefSeq:NP_414796
ModBase (EcoliWiki Page)	ModBase:P37009
edit table

Notes

Links

[back to top]

Name	URL	Comments
edit table

References

[back to top]

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.00 ^5.01 ^5.02 ^5.03 ^5.04 ^5.05 ^5.06 ^5.07 ^5.08 ^5.09 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
↑ ^6.0 ^6.1 ^6.2 ^6.3 ^6.4 ^6.5 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^7.0 ^7.1 ^7.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

afuC:Gene Product(s): Difference between revisions

Revision as of 21:50, 21 May 2009

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 604: / Line 604: @@
 |
 SP_KW:KW-0378
+|
+F
+|
+Seeded from EcoCyc
+|
+complete
+|-
+|
+|
+GO:0016820
+|
+hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
+|
+GO_REF:0000002<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR008995<br />InterPro:IPR013611
 |
 F

afuC:Gene Product(s): Difference between revisions

Revision as of 21:50, 21 May 2009

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

Search