eutS:Gene Product(s): Difference between revisions
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Revision as of 16:27, 18 April 2009
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
YpfE |
|---|---|
| Synonyms |
predicted carboxysome structural protein with predicted role in ethanol utilization[1], B2462[2][1], YpfE[2][1], EutS[2][1] |
| Product description |
predicted carboxysome structural protein with predicted role in ethanolamine utilization[2][3] Ethanolamine catabolic microcompartment shell protein[4] |
| EC number (for enzymes) |
|
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0006580 |
ethanolamine metabolic process |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [5] |
complete | |||
| GO:0009310 |
amine catabolic process |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
Q79BD2 |
Experiment(s):EBI-1142911 | ||
|
Protein |
yhjB |
Experiment(s):EBI-1142911 | ||
|
Protein |
phnN |
Experiment(s):EBI-1142911 | ||
|
Protein |
ybhS |
Experiment(s):EBI-1142911 | ||
|
Protein |
sfmC |
Experiment(s):EBI-1142911 | ||
|
Protein |
greB |
Experiment(s):EBI-1142911 | ||
|
Protein |
rplD |
Experiment(s):EBI-1142911 | ||
|
Protein |
alpA |
Experiment(s):EBI-1142911 | ||
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
| edit table |
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MPNFVIYSDE KLSRYTKVFH RRRLMDKERI IQEFVPGKQV TLAHLIAHPG EELAKKIGVP DAGAIGIMTL TPGETAMIAG DLALKAADVH IGFLDRFSGA LVIYGSVGAV EEALSQTVSG LGRLLNYTLC EMTKS |
|---|---|
| Length |
135 |
| Mol. Wt |
11.65 kDa (calc) [2] |
| pI | |
| Extinction coefficient |
5960 - 6085 (calc based on 4 Y, 0 W, and 1 C residues) |
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
| Structures |
<beststructure>eutS 562</beststructure> |
|---|---|
| Models |
View models at: |
| edit table |
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
- ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
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