opgB:Gene Product(s): Difference between revisions

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C
C
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete
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GO:0016740
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transferase activity
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0808
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F
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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required fields missing   
required fields missing   
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GO:0016740
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transferase activity
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GO_REF:0000004
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IEA: Inferred from Electronic Annotation
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SP_KW:KW-0808
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F
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
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complete


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KKFDLVITAK AYGNNASRPI PVRVGNEEQT LVLGNEVTTT TLHFDNPTDA DTLVIVPPEP
KKFDLVITAK AYGNNASRPI PVRVGNEEQT LVLGNEVTTT TLHFDNPTDA DTLVIVPPEP
VSTNEGNILG HSPRKLGIGM VEIKVVEREG</pre>  
VSTNEGNILG HSPRKLGIGM VEIKVVEREG</pre>  
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!align=left {{table heading style}} |Length
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750
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!align=left {{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt

Revision as of 19:02, 10 April 2009

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

MdoB product

Synonyms

phosphoglycerol transferase I product[1], B4359 product[2][1], YjjO product[2][1], MdoB product[2][1]

Product description

phosphoglycerol transferase I[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0008152

metabolic process

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000917
InterPro:IPR001952

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0008484

sulfuric ester hydrolase activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000917

F

Seeded from EcoCyc [5]

complete

GO:0008960

phosphatidylglycerol-membrane-oligosaccharide glycerophosphotransferase activity

GO_REF:0000003
GO_REF:0000020

IEA: Inferred from Electronic Annotation

EC:2.7.8.20
HAMAP:MF_01070

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0009250

glucan biosynthetic process

GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01070

P

Seeded from EcoCyc [5]

complete

GO:0016020

membrane

GO_REF:0000004
GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0397
SP_KW:KW-0472

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0016021

integral to membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc [5]

complete

GO:0016740

transferase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc [5]

complete

GO:0003824

catalytic activity

GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017849
InterPro:IPR017850

F

Seeded from EcoCyc [5]

complete

GO:0005886

plasma membrane

GO_REF:0000020
GO_REF:0000004
GO_REF:0000004
GO_REF:0000023

IEA: Inferred from Electronic Annotation

HAMAP:MF_01070
SP_KW:KW-0997
SP_KW:KW-1003
SP_SL:SL-0037

C

Seeded from EcoCyc [5]

complete

GO:0008654

phospholipid biosynthetic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0006970

response to osmotic stress

P

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes

plasma membrane

From EcoCyc[3]

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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MLIYAWKAGR NTWWFAATLT VLGLFVVLNI TLFASDYFTG DGINDAVLYT LTNSLTGAGV
SKYILPGIGI VLGLTAVFGA LGWILRRRRH HPHHFGYSLL ALLLALGSVD ASPAFRQITE
LVKSQSRDGD PDFAAYYKEP SKTIPDPKLN LVYIYGESLE RTYFDNEAFP DLTPELGALK
NEGLDFSHTQ QLPGTDYTIA GMVASQCGIP LFAPFEGNAS ASVSSFFPQN ICLGDILKNS
GYQNYFVQGA NLRFAGKDVF LKSHGFDHLY GSEELKSVVA DPHYRNDWGF YDDTVLDEAW
KKFEELSRSG QRFSLFTLTV DTHHPDGFIS RTCNRKKYDF DGKPNQSFSA VSCSQENIAT
FINKIKASPW FKDTVIVVSS DHLAMNNTAW KYLNKQDRNN LFFVIRGDKP QQETLAVKRN
TMDNGATVLD ILGGDNYLGL GRSSLSGQSM SEIFLNIKEK TLAWKPDIIR LWKFPKEMKE
FTIDQQKNMI AFSGSHFRLP LLLRVSDKRV EPLPESEYSA PLRFQLADFA PRDNFVWVDR
CYKMAQLWAP ELALSTDWCV SQGQLGGQQI VQHVDKTTWQ GKTAFKDTVI DMARYKGNVD
TLKIVDNDIR YKADSFIFNV AGAPEEVKQF SGISRPESWG RWSNAQLGDE VKIEYKHPLP
KKFDLVITAK AYGNNASRPI PVRVGNEEQT LVLGNEVTTT TLHFDNPTDA DTLVIVPPEP
VSTNEGNILG HSPRKLGIGM VEIKVVEREG
Length

750

Mol. Wt

85.49 kDa (calc) [2]

pI
Extinction coefficient

125250 - 126000 (calc based on 25 Y, 16 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes

Domain

13 - 35

Predicted membrane-spanning helix.

TMD predicted by TMHMM[6]

Domain

63 - 85

Predicted membrane-spanning helix.

TMD predicted by TMHMM[6]

Domain

92 - 114

Predicted membrane-spanning helix.

TMD predicted by TMHMM[6]

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tmhmm.php?gene=mdoB&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure>mdoB 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:PGLYCEROLTRANSI-MONOMER

UniProt (EcoliWiki Page)

UniProt:P39401

PFAM (EcoliWiki Page)

PFAM:PF00884

RefSeq (EcoliWiki Page)

RefSeq:NP_418779

ModBase (EcoliWiki Page)

ModBase:P39401


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Notes

Links

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Name URL Comments
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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  6. ↑ 6.0 6.1 6.2 Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed


Categories

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