ylaB:Gene Product(s): Difference between revisions

Standard name	YlaB
Synonyms	conserved inner membrane protein^[1], B0457^[2]^[1], YlaB^[2]^[1]
Product description	conserved protein^[2]; conserved inner membrane protein^[3] Putative cyclic-di-GMP phosphodiesterase, function unknown^[4]
EC number (for enzymes)
edit table

Notes

Function

[back to top]

Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0016021	integral to membrane	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0812	C	Seeded from EcoCyc 12.5 ^[5]	complete
	GO:0005886	plasma membrane	GO_REF:0000004 GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_KW:KW-1003 SP_SL:SL-0039	C	Seeded from EcoCyc ^[6]	complete
	GO:0016020	membrane	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0472	C	Seeded from EcoCyc ^[6]	complete
edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
edit table

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Notes
plasma membrane	C-terminus localized in the cytoplasm with 2 predicted transmembrane domains	Daley et al. (2005) ^[7]
edit table

Notes

Structure and Physical Properties

[back to top]

Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence	at EcoCyc MLVRTRHLVG LISGVLILSV LLPVGLSIWL AHQQVETSFI EELDTYSSRV AIRANKVATQ GKDALQELER WQGAACSEAH LMEMRRVSYS YRYIQEVAYI DNNVPQCSSL EHESPPDTFP EPGKISKDGY RVWLTSHNDL GIIRYMVAMG TAHYVVMIDP ASFIDVIPYS SWQIDAAIIG NAHNVVITSS DEIAQGIITR LQKTPGEHIE NNGIIYDILP LPEMNISIIT WASTKMLQKG WHRQVFIWLP LGLVIGLLAA MFVLRILRRI QSPHHRLQDA IENRDICVHY QPIVSLANGK IVGAEALARW PQTDGSWLSP DSFIPLAQQT GLSEPLTLLI IRSVFEDMGD WLRQHPQQHI SINLESPVLT SEKIPQLLRD MINHYQVNPR QIALELTERE FADPKTSAPI ISRYREAGHE IYLDDFGTGY SSLSYLQDLD VDILKIDKSF VDALEYKNVT PHIIEMAKTL KLKMVAEGIE TSKQEEWLRQ HGVHYGQGWL YSKALPKEDF LRWAEQHL
Mol. Wt	58.72 kDa (calc) ^[2]
pI
Extinction coefficient	99810 - 100185 (calc based on 19 Y, 13 W, and 3 C residues)
edit table

Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes
Domain	268 - 516	EAL	UniProt:P77473
Domain	7 - 29	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[8]
Domain	245 - 267	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[8]
edit table

Click the image to view raw output from TMHMM.

Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

Models

View models at:

edit table

Notes

Gene Product Resources

[back to top]

See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
edit table

Notes

Accessions in Other Databases

[back to top]

See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:G6252-MONOMER
UniProt (EcoliWiki Page)	UniProt:P77473
PFAM (EcoliWiki Page)	PFAM:PF00563
RefSeq (EcoliWiki Page)	RefSeq:NP_414990
edit table

Notes

Links

[back to top]

Name	URL	Comments
edit table

References

[back to top]

↑ ^1.0 ^1.1 ^1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^6.0 ^6.1 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
↑ ^8.0 ^8.1 Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed

ylaB:Gene Product(s): Difference between revisions

Revision as of 15:38, 12 March 2009

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 82: / Line 82: @@
 |
-GO:0016020
+GO:0016021
 |
-membrane
+integral to membrane
 |
 GO_REF:0000004
@@ Line 90: / Line 90: @@
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0472
+SP_KW:KW-0812
 |
 C
@@ Line 101: / Line 101: @@
 |
-GO:0016021
+GO:0005886
 |
-integral to membrane
+plasma membrane
 |
-GO_REF:0000004
+GO_REF:0000004<br />GO_REF:0000023
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0812
+SP_KW:KW-1003<br />SP_SL:SL-0039
 |
 C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
 |
 complete
@@ Line 120: / Line 120: @@
 |
-GO:0005886
+GO:0016020
 |
-plasma membrane
+membrane
 |
-GO_REF:0000004<br />GO_REF:0000023
+GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-1003<br />SP_SL:SL-0039
+SP_KW:KW-0472
 |
 C

ylaB:Gene Product(s): Difference between revisions

Revision as of 15:38, 12 March 2009

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

Search