ykfG:Gene Product(s): Difference between revisions
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/> | Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/> | ||
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complete | |||
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GO:0005515 | |||
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protein binding | |||
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PMID:16606699 | |||
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IPI: Inferred from Physical Interaction | |||
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UniProtKB:P0AE60 | |||
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F | |||
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/> | |||
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complete | complete | ||
Revision as of 15:36, 12 March 2009
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
YkfG |
|---|---|
| Synonyms |
CP4-6 prophage; predicted DNA repair protein[1], B0247[2][1], YkfG[2][1] |
| Product description |
putative DNA repair protein[2]; CP4-6 prophage; predicted DNA repair protein[3] Function unknown, CP4-6 putative prophage remnant[4] |
| EC number (for enzymes) |
|
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0006281 |
DNA repair |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [5] |
complete | |||
| GO:0005515 |
protein binding |
IPI: Inferred from Physical Interaction |
F |
Seeded from EcoCyc [7] |
complete | |||
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
cedA |
Experiment(s):EBI-1136014 | ||
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
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Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MKQLSFLPGE MTPQDRRLIQ RALRALDRHL HEPGVAFTST HAVREWLRLH MAALEREEFR VLYLDNQNQL IAHETLFTGT INRTEVHPRE VVKRALHFNA AAVILAHNHP SGETTPSQAD KTLTQRLVQV LQLVDIRVPD HLIVGGRQIY SFAEHGLL |
|---|---|
| Mol. Wt |
18.1 kDa (calc) [2] |
| pI | |
| Extinction coefficient |
8480 (calc based on 2 Y, 1 W, and 0 C residues) |
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Domains/Motifs/Modification Sites
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
| Type | Residues | Description | Notes |
|---|---|---|---|
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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
| Structures |
<beststructure>ykfG 562</beststructure> |
|---|---|
| Models |
View models at: |
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Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 6.0 6.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
- ↑ EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
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