dppD:Gene Product(s): Difference between revisions
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complete | |||
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GO:0005737 | |||
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cytoplasm | |||
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PMID:7536291 | |||
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ISS: Inferred from Sequence or Structural Similarity | |||
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C | |||
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/> | Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/> | ||
Revision as of 23:25, 11 March 2009
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
DppD |
|---|---|
| Synonyms |
dipeptide transporter[1], ATP-binding component of ABC superfamily[1], B3541[2][1], DppD[2][1] |
| Product description |
Component of dipeptide ABC transporter[2][3] Dipeptide/heme transport, ATP-binding protein; also transports 5-aminolevulinic acid[4] |
| EC number (for enzymes) |
|
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0005524 |
ATP binding |
ISS: Inferred from Sequence or Structural Similarity |
F |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0006857 |
oligopeptide transport |
IGI: Inferred from Genetic Interaction |
P |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0015198 |
oligopeptide transporter activity |
IGI: Inferred from Genetic Interaction |
F |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0015421 |
oligopeptide-transporting ATPase activity |
ISS: Inferred from Sequence or Structural Similarity |
F |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0042936 |
dipeptide transporter activity |
IGI: Inferred from Genetic Interaction |
F |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0042938 |
dipeptide transport |
IGI: Inferred from Genetic Interaction |
P |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0043190 |
ATP-binding cassette (ABC) transporter complex |
ISS: Inferred from Sequence or Structural Similarity |
C |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0009063 |
amino acid catabolic process |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0000166 |
nucleotide binding |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [8] |
complete | |||
| GO:0005737 |
cytoplasm |
ISS: Inferred from Sequence or Structural Similarity |
C |
Seeded from EcoCyc [8] |
complete | |||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
Subunits of dipeptide ABC transporter |
could be indirect |
| |
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
|
cytoplasm |
From EcoCyc[3] | ||
| edit table |
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MALLNVDKLS VHFGDESAPF RAVDRISYSV KQGEVVGIVG ESGSGKSVSS LAIMGLIDYP GRVMAEKLEF NGQDLQRISE KERRNLVGAE VAMIFQDPMT SLNPCYTVGF QIMEAIKVHQ GGNKSTRRQR AIDLLNQVGI PDPASRLDVY PHQLSGGMSQ RVMIAMAIAC RPKLLIADEP TTALDVTIQA QIIELLLELQ QKENMALVLI THDLALVAEA AHKIIVMYAG QVVETGDAHA IFHAPRHPYT QALLRALPEF AQDKERLASL PGVVPGKYDR PNGCLLNPRC PYATDRCRAE EPALNMLADG RQSKCHYPLD DAGRPTL |
|---|---|
| Mol. Wt |
35.84 kDa (calc) [2] |
| pI | |
| Extinction coefficient |
13410 - 14160 (calc based on 9 Y, 0 W, and 6 C residues) |
| edit table |
Domains/Motifs/Modification Sites
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
| Type | Residues | Description | Notes |
|---|---|---|---|
|
Domain |
4 - 254 |
||
| edit table |
Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
| Structures |
<beststructure>dppD 562</beststructure> |
|---|---|
| Models |
View models at: |
| edit table |
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 5.3 Abouhamad, WN & Manson, MD (1994) The dipeptide permease of Escherichia coli closely resembles other bacterial transport systems and shows growth-phase-dependent expression. Mol. Microbiol. 14 1077-92 PubMed
- ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 7.0 7.1 7.2 7.3 Olson, ER et al. (1991) Identification and characterization of dppA, an Escherichia coli gene encoding a periplasmic dipeptide transport protein. J. Bacteriol. 173 234-44 PubMed
- ↑ 8.0 8.1 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
Categories
- GO:0005524 ! ATP binding
- GO:0006857 ! oligopeptide transport
- GO:0015198 ! oligopeptide transporter activity
- GO:0015421 ! ATPase-coupled oligopeptide transmembrane transporter activity
- GO:0042936 ! dipeptide transporter activity
- GO:0042938 ! dipeptide transport
- GO:0043190 ! ATP-binding cassette (ABC) transporter complex
- GO:0009063 ! cellular amino acid catabolic process
- GO:0000166 ! nucleotide binding
- GO:0005737 ! cytoplasm
- Proteins
- GO:0009063 ! amino acid catabolic process
- Complex:dipeptide ABC transporter
- Location:cytoplasm