dcuA:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
imported>Wikientrybot
Adding EcoGene Description
Data loaded by TableEdit_Loader.
Line 211: Line 211:
|
|
required fields missing   
required fields missing   
|-
|
|
GO:0005886
|
plasma membrane
|
GO_REF:0000004<br />GO_REF:0000004<br />GO_REF:0000023
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0997<br />SP_KW:KW-1003<br />SP_SL:SL-0037
|
C
|
Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
|
complete


|-class='sortbottom'
|-class='sortbottom'

Revision as of 22:57, 11 March 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

DcuA product

Synonyms

C4-dicarboxylate antiporter product[1], B4138 product[2][1], GenA product[2][1], DcuA product[2][1]

Product description

DcuA dicarboxylate Dcu transporter[2][3]

C4-dicarboxylate transporter, anaerobic[4]

EC number (for enzymes)


edit table


Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0006810

transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc 12.5 [5]

complete

GO:0015556

C4-dicarboxylate transmembrane transporter activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004668

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0015740

C4-dicarboxylate transport

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004668

P

Seeded from EcoCyc 12.5 [5]

complete

GO:0016020

membrane

GO_REF:0000004
GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0397
SP_KW:KW-0472

C

Seeded from EcoCyc 12.5 [5]

complete

GO:0016021

integral to membrane

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR004668
SP_KW:KW-0812

C

Seeded from EcoCyc 12.5 [5]

complete

GO:0015292

uniporter activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0016052

carbohydrate catabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0005886

plasma membrane

GO_REF:0000004
GO_REF:0000004
GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997
SP_KW:KW-1003
SP_SL:SL-0037

C

Seeded from EcoCyc [6]

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes

plasma membrane

C-terminus localized to the periplasm with 11 predicted transmembrane domains

Daley et al. (2005) [7]

plasma membrane

From EcoCyc[3]

edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MLVVELIIVL LAIFLGARLG GIGIGFAGGL GVLVLAAIGV KPGNIPFDVI SIIMAVIAAI
SAMQVAGGLD YLVHQTEKLL RRNPKYITIL APIVTYFLTI FAGTGNISLA TLPVIAEVAK
EQGVKPCRPL STAVVSAQIA ITASPISAAV VYMSSVMEGH GISYLHLLSV VIPSTLLAVL
VMSFLVTMLF NSKLSDDPIY RKRLEEGLVE LRGEKQIEIK SGAKTSVWLF LLGVVGVVIY
AIINSPSMGL VEKPLMNTTN AILIIMLSVA TLTTVICKVD TDNILNSSTF KAGMSACICI
LGVAWLGDTF VSNNIDWIKD TAGEVIQGHP WLLAVIFFFA SALLYSQAAT AKALMPMALA
LNVSPLTAVA SFAAVSGLFI LPTYPTLVAA VQMDDTGTTR IGKFVFNHPF FIPGTLGVAL
AVCFGFVLGS FML
Mol. Wt

45.75 kDa (calc) [2]

pI
Extinction coefficient

35410 - 36035 (calc based on 9 Y, 4 W, and 5 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes

Domain

162 - 184

Predicted membrane-spanning helix.

TMD predicted by TMHMM[8]

Domain

226 - 243

Predicted membrane-spanning helix.

TMD predicted by TMHMM[8]

Domain

258 - 277

Predicted membrane-spanning helix.

TMD predicted by TMHMM[8]

Domain

284 - 306

Predicted membrane-spanning helix.

TMD predicted by TMHMM[8]

Domain

326 - 345

Predicted membrane-spanning helix.

TMD predicted by TMHMM[8]

Domain

358 - 380

Predicted membrane-spanning helix.

TMD predicted by TMHMM[8]

Domain

410 - 432

Predicted membrane-spanning helix.

TMD predicted by TMHMM[8]

Domain

130 - 152

Predicted membrane-spanning helix.

TMD predicted by TMHMM[8]

Domain

50 - 72

Predicted membrane-spanning helix.

TMD predicted by TMHMM[8]

Domain

87 - 109

Predicted membrane-spanning helix.

TMD predicted by TMHMM[8]

Domain

15 - 37

Predicted membrane-spanning helix.

TMD predicted by TMHMM[8]

edit table

tmhmm.php?gene=dcuA&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure>dcuA 562</beststructure>

Models

View models at:

edit table


Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:DCUA-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0ABN5

PFAM (EcoliWiki Page)

PFAM:PF03605

RefSeq (EcoliWiki Page)

RefSeq:NP_418561


edit table


Notes

Links

[back to top]


Name URL Comments
edit table



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  6. ↑ EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
  7. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
  8. ↑ 8.00 8.01 8.02 8.03 8.04 8.05 8.06 8.07 8.08 8.09 8.10 Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=dcuA:Gene_Product(s)&oldid=782511"