arsR:Gene Product(s): Difference between revisions
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GO:0046685 | |||
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response to arsenic | |||
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GO_REF:0000004 | |||
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IEA: Inferred from Electronic Annotation | |||
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SP_KW:KW-0059 | |||
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P | |||
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Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/> | |||
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complete | |||
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Revision as of 21:13, 11 March 2009
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
ArsR |
|---|---|
| Synonyms |
DNA-binding transcriptional repressor[1], B3501[2][1], ArsE[2][1], ArsR[2][1] |
| Product description |
ArsR transcriptional regulator[2][3] Arsenate resistance operon repressor; resistance to arsenate, arsenite, and antimonite[4] |
| EC number (for enzymes) |
|
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0046685 |
response to arsenic |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [5] |
complete | |||
| GO:0006355 |
regulation of transcription, DNA-dependent |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc [5] |
complete | |||
| GO:0005622 |
intracellular |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc [5] |
complete | |||
| GO:0006350 |
transcription |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0003700 |
transcription factor activity |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [5] |
complete | |||
| GO:0003677 |
DNA binding |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc [5] |
complete | |||
| GO:0006350 |
transcription |
NR |
P |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0006350 |
transcription |
IDA: Inferred from Direct Assay |
P |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0016564 |
transcription repressor activity |
NR |
F |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0016564 |
transcription repressor activity |
IDA: Inferred from Direct Assay |
F |
Seeded from EcoCyc 12.5 [6] |
complete | |||
| GO:0042493 |
response to drug |
P |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| GO:0005737 |
cytoplasm |
C |
Seeded from EcoCyc 11.1[3]. |
required fields missing | ||||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
| edit table |
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Sequence |
MSFLLPIQLF KILADETRLG IVLLLSELGE LCVCDLCTAL DQSQPKISRH LALLRESGLL LDRKQGKWVH YRLSPHIPAW AAKIIDEAWR CEQEKVQAIV RNLARQNCSG DSKNICS |
|---|---|
| Mol. Wt |
13.25 kDa (calc) [2] |
| pI | |
| Extinction coefficient |
17990 - 18740 (calc based on 1 Y, 3 W, and 6 C residues) |
| edit table |
Domains/Motifs/Modification Sites
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
| Type | Residues | Description | Notes |
|---|---|---|---|
|
Domain |
1 - 92 |
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| edit table |
Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
| Structures |
<beststructure>arsR 562</beststructure> |
|---|---|
| Models |
View models at: |
| edit table |
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 5.3 5.4 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
- ↑ 6.0 6.1 6.2 6.3 6.4 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 7.0 7.1 Xu, C et al. (1996) The chromosomal arsR gene of Escherichia coli encodes a trans-acting metalloregulatory protein. J Biol Chem 271 2427-32 PubMed
- ↑ 8.0 8.1 Cai, J & DuBow, MS (1996) Expression of the Escherichia coli chromosomal ars operon. Can J Microbiol 42 662-71 PubMed
Categories
- GO:0046685 ! response to arsenic-containing substance
- GO:0006355 ! regulation of transcription, DNA-templated
- GO:0005622 ! intracellular
- GO:0006350 ! transcription
- GO:0003700 ! DNA-binding transcription factor activity
- GO:0003677 ! DNA binding
- GO:0016564 ! obsolete transcription repressor activity
- GO:0042493 ! response to drug
- GO:0005737 ! cytoplasm
- Proteins
- GO:0016564 ! transcription repressor activity