amiD:Gene Product(s): Difference between revisions

Standard name	YbjR
Synonyms	predicted amidase and lipoprotein^[1], YbjR^[2]^[1], B0867^[2]^[1]
Product description	predicted amidase and lipoprotein^[2]^[3]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki. See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0005886	plasma membrane	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-1003	C	Seeded from EcoCyc ^[4]	complete
	GO:0007047	cell wall organization	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0961	P	Seeded from EcoCyc ^[4]	complete
	GO:0009253	peptidoglycan catabolic process	GO_REF:0000002 PMID:17526703^[5]	IDA: Inferred from Direct Assay	InterPro:IPR002502	P	Seeded from EcoCyc ^[4]	complete
	GO:0008745	N-acetylmuramoyl-L-alanine amidase activity	PMID:17526703^[5]	IDA: Inferred from Direct Assay		F		complete
	GO:0019867	outer membrane	PMID:17526703^[5]	IDA: Inferred from Direct Assay		C		complete
	GO:0008270	zinc ion binding	PMID:17526703^[5]	IDA: Inferred from Direct Assay		F		complete
	GO:0009279	cell outer membrane	GO_REF:0000004 GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_KW:KW-0998 SP_SL:SL-0040	C	Seeded from EcoCyc ^[4]	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
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Notes

Localization

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Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence	at EcoCyc MRRFFWLVAA ALLLAGCAGE KGIVEKEGYQ LDTRRQAQAA YPRIKVLVIH YTADDFDSSL ATLTDKQVSS HYLVPAVPPR YNGKPRIWQL VPEQELAWHA GISAWRGATR LNDTSIGIEL ENRGWQKSAG VKYFAPFEPA QIQALIPLAK DIIARYHIKP ENVVAHADIA PQRKDDPGPL FPWQQLAQQG IGAWPDAQRV NFYLAGRAPH TPVDTASLLE LLARYGYDVK PDMTPREQRR VIMAFQMHFR PTLYNGEADA ETQAIAEALL EKYGQD
Mol. Wt	31.07 kDa (calc) ^[2]
pI
Extinction coefficient	56380 - 56505 (calc based on 12 Y, 7 W, and 1 C residues)
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Domains/Motifs/Modification Sites

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Type	Residues	Description	Notes
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Structure

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Structures

Models

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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:G6452-MONOMER
SwissModel (EcoliWiki Page)	SwissModel:P75820
UniProt (EcoliWiki Page)	UniProt:P75820
PFAM (EcoliWiki Page)	PFAM:PF01510
RefSeq (EcoliWiki Page)	RefSeq:NP_415388
ModBase (EcoliWiki Page)	ModBase:P75820
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 ^4.3 EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
↑ ^5.0 ^5.1 ^5.2 ^5.3 Uehara, T & Park, JT (2007) An anhydro-N-acetylmuramyl-L-alanine amidase with broad specificity tethered to the outer membrane of Escherichia coli. J. Bacteriol. 189 5634-41 PubMed

amiD:Gene Product(s): Difference between revisions

Revision as of 16:17, 11 March 2009

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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@@ Line 109: / Line 109: @@
 |
 SP_KW:KW-0961
+|
+P
+|
+Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+|
+complete
+|-
+|
+|
+GO:0009253
+|
+peptidoglycan catabolic process
+|
+GO_REF:0000002<br />PMID:17526703
+|
+IDA: Inferred from Direct Assay
+|
+InterPro:IPR002502<br />
 |
 P
@@ Line 176: / Line 195: @@
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-GO:0009253
+GO:0009279
 |
-peptidoglycan catabolic process
+cell outer membrane
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-GO_REF:0000002<br />PMID:17526703
+GO_REF:0000004<br />GO_REF:0000023
 |
-IDA: Inferred from Direct Assay
+IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR002502<br />
+SP_KW:KW-0998<br />SP_SL:SL-0040
 |
-P
+C
 |
 Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>

amiD:Gene Product(s): Difference between revisions

Revision as of 16:17, 11 March 2009

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

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