prkB:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Data loaded by TableEdit_Loader.
imported>Wikientrybot
Move help links into the <above> tag inside templates.
Line 59: Line 59:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.R46aae3fab163f-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.R46aae3fab163f-->
{{Product_nomenclature_help}}
 
<protect><!--Nomenclature_notes--></protect>
<protect><!--Nomenclature_notes--></protect>
===Notes===
===Notes===
Line 67: Line 67:
{{BacktoTop}}
{{BacktoTop}}
<protect>
<protect>
<big>'''Gene Ontology'''</big><br />{{Product_GO_help}}<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.W46aae3fbcd011-->
<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.27185.W46aae3fbcd011-->
<!--
<!--
******************************************************************************************
******************************************************************************************
Line 81: Line 81:


|
|
[[Category:GO:0016740_!_transferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016740_!_transferase_activity GO:0016740]
GO:0016740
|
|
transferase activity
transferase activity
|
|
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
GO_REF:0000004
|
|
IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
|
[http://www.uniprot.org/keywords/KW-0808 SP_KW:KW-0808]
SP_KW:KW-0808
|
|
F
F
Line 100: Line 100:


|
|
[[Category:GO:0016301_!_kinase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016301_!_kinase_activity GO:0016301]
GO:0016301
|
|
kinase activity
kinase activity
|
|
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
GO_REF:0000002<br />GO_REF:0000004
|
|
IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
|
[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR006083 InterPro:IPR006083]<br />[http://www.uniprot.org/keywords/KW-0418 SP_KW:KW-0418]
InterPro:IPR006083<br />SP_KW:KW-0418
|
|
F
F
Line 119: Line 119:


|
|
[[Category:GO:0009058_!_biosynthetic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0009058_!_biosynthetic_process GO:0009058]
GO:0009058
|
|
biosynthetic process
biosynthetic process
|
|
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
GO_REF:0000002
|
|
IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
|
[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR006083 InterPro:IPR006083]
InterPro:IPR006083
|
|
P
P
Line 138: Line 138:


|
|
[[Category:GO:0008974_!_phosphoribulokinase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008974_!_phosphoribulokinase_activity GO:0008974]
GO:0008974
|
|
phosphoribulokinase activity
phosphoribulokinase activity
|
|
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000003 GO_REF:0000003]
GO_REF:0000002<br />GO_REF:0000003
|
|
IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
|
[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR006082 InterPro:IPR006082]<br />[http://www.expasy.org/cgi-bin/nicezyme.pl?2.7.1.19 EC:2.7.1.19]
InterPro:IPR006082<br />EC:2.7.1.19
|
|
F
F
Line 157: Line 157:


|
|
[[Category:GO:0005975_!_carbohydrate_metabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005975_!_carbohydrate_metabolic_process GO:0005975]
GO:0005975
|
|
carbohydrate metabolic process
carbohydrate metabolic process
|
|
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
GO_REF:0000002
|
|
IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
|
[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR006082 InterPro:IPR006082]
InterPro:IPR006082
|
|
P
P
Line 176: Line 176:


|
|
[[Category:GO:0005524_!_ATP_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005524_!_ATP_binding GO:0005524]
GO:0005524
|
|
ATP binding
ATP binding
|
|
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000004
|
|
IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
|
[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR006082 InterPro:IPR006082]<br />[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR006083 InterPro:IPR006083]<br />[http://www.uniprot.org/keywords/KW-0067 SP_KW:KW-0067]
InterPro:IPR006082<br />InterPro:IPR006083<br />SP_KW:KW-0067
|
|
F
F
Line 195: Line 195:


|
|
[[Category:GO:0000166_!_nucleotide_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0000166_!_nucleotide_binding GO:0000166]
GO:0000166
|
|
nucleotide binding
nucleotide binding
|
|
[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
GO_REF:0000004
|
|
IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
|
|
[http://www.uniprot.org/keywords/KW-0547 SP_KW:KW-0547]
SP_KW:KW-0547
|
|
F
F
Line 214: Line 214:
   
   
|
|
[[Category:GO:0006006_!_glucose_metabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006006_!_glucose_metabolic_process GO:0006006]
GO:0006006  
|
|
glucose metabolic process  
glucose metabolic process  
Line 233: Line 233:
   
   
|
|
[[Category:GO:0008974_!_phosphoribulokinase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008974_!_phosphoribulokinase_activity GO:0008974]
GO:0008974  
|
|
phosphoribulokinase activity  
phosphoribulokinase activity  
Line 269: Line 269:
Protein
Protein
|
|
[[dapB:Gene_Product(s)|dapB]]<br />
dapB<br />
|
|


|[[PMID:16606699]]<ref name=PMID:16606699/>
|
|
Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1145680 EBI-1145680]<br />  
PMID:16606699
|
Experiment(s):EBI-1145680<br />  
|-  
|-  
|
|
Protein
Protein
|
|
[[purC:Gene_Product(s)|purC]]<br />
purC<br />
|
|


|[[PMID:16606699]]<ref name=PMID:16606699/>
|
|
Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1145680 EBI-1145680]<br />  
PMID:16606699
|
Experiment(s):EBI-1145680<br />  
|-  
|-  
|
|
Protein
Protein
|
|
[[groL:Gene_Product(s)|groL]]<br />
groL<br />
|
|


|[[PMID:16606699]]<ref name=PMID:16606699/>
|
|
Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1145680 EBI-1145680]<br />  
PMID:16606699
|
Experiment(s):EBI-1145680<br />  


|-class='sortbottom'
|-class='sortbottom'
Line 300: Line 303:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.U46aae3ffc171e-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.U46aae3ffc171e-->
{{Product_interactions_help}}
 
<!--Function_notes--></protect>
<!--Function_notes--></protect>
===Notes===
===Notes===
Line 321: Line 324:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.Q46a874d242d7f-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.Q46a874d242d7f-->
{{Product_localization_help}}
 
<protect><!--Localization_notes--></protect>
<protect><!--Localization_notes--></protect>


Line 366: Line 369:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.K46aae401c5437-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.K46aae401c5437-->
{{Product_physical_properties_help}}
 


<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span>
<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span>
Line 384: Line 387:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.J46aae402480d4-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.J46aae402480d4-->
{{Product_domains_motifs_help}}
 


<span id="Structure"></span><big>'''Structure'''</big>
<span id="Structure"></span><big>'''Structure'''</big>
Line 417: Line 420:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.D46a874d3d856e-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.D46a874d3d856e-->
{{Product_structure_help}}
 
<!--Structure_notes--></protect>
<!--Structure_notes--></protect>
===Notes===
===Notes===
Line 439: Line 442:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.T46aae4031c7ae-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.T46aae4031c7ae-->
{{Product_resources_help}}
 
<protect><!--Resources_notes--></protect>
<protect><!--Resources_notes--></protect>
===Notes===
===Notes===
Line 503: Line 506:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.F46aae40381bec-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.F46aae40381bec-->
{{Product_accessions_help}}
 
<protect><!--Accessions_notes--></protect>
<protect><!--Accessions_notes--></protect>
===Notes===
===Notes===
Line 525: Line 528:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.Y46a874d8247a7-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.27185.Y46a874d8247a7-->
{{Links_help}}
 




Line 532: Line 535:
==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
 
<references/>
<references/>
__NOTOC__
__NOTOC__

Revision as of 22:46, 16 February 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

PrkB

Synonyms

predicted phosphoribulokinase[1], B3355[2][1], YhfF[2][1], PrkB[2][1]

Product description

predicted phosphoribulokinase[2][3]

EC number (for enzymes)
edit table


Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016740

transferase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0016301

kinase activity

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR006083
SP_KW:KW-0418

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0009058

biosynthetic process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006083

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0008974

phosphoribulokinase activity

GO_REF:0000002
GO_REF:0000003

IEA: Inferred from Electronic Annotation

InterPro:IPR006082
EC:2.7.1.19

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0005975

carbohydrate metabolic process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006082

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0005524

ATP binding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR006082
InterPro:IPR006083
SP_KW:KW-0067

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0000166

nucleotide binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0006006

glucose metabolic process

P

Seeded from EcoCyc 10.6[2].

required fields missing

GO:0008974

phosphoribulokinase activity

HINF

F

Seeded from EcoCyc 11.1[3].

required fields missing

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

dapB

PMID:16606699[5]

Experiment(s):EBI-1145680

Protein

purC

PMID:16606699[5]

Experiment(s):EBI-1145680

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1145680

edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes
edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MSAKHPVIAV TGSSGAGTTT TSLAFRKIFA QLNLHAAEVE GDSFHRYTRP EMDMAIRKAR
DAGRHISYFG PEANDFGLLE QTFIEYGQSG KGKSRKYLHT YDEAVPWNQV PGTFTPWQPL
PEPTDVLFYE GLHGGVVTPQ HNVAQHVDLL VGVVPIVNLE WIQKLIRDTS ERGHSREAVM
DSVVRSMEDY INYITPQFSR THLNFQRVPT VDTSNPFAAK GIPSLDESFV VIHFRNLEGI
DFPWLLAMLQ GSFISHINTL VVPGGKMGLA MELIMLPLVQ RLMEGKKIE
Mol. Wt

32.34 kDa (calc) [2]

pI
Extinction coefficient

33920 (calc based on 8 Y, 4 W, and 0 C residues)

edit table


Domains/Motifs/Modification Sites See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
edit table


Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure>prkB 562</beststructure>

Models

View models at:

edit table


Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG12365-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P0AEX5

UniProt (EcoliWiki Page)

UniProt:P0AEX5

PFAM (EcoliWiki Page)

PFAM:PF00485

RefSeq (EcoliWiki Page)

RefSeq:NP_417814

ModBase (EcoliWiki Page)

ModBase:P0AEX5


edit table


Notes

Links

[back to top]


Name URL Comments
edit table



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ 5.0 5.1 5.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=prkB:Gene_Product(s)&oldid=731178"