oxc:Gene Product(s): Difference between revisions

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<big>'''Gene Ontology'''</big><br />{{Product_GO_help}}<!--box uid=421aa90e079fa326b6494f812ad13e79.24972.X46aaa426e7bc4-->
<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.24972.X46aaa426e7bc4-->
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[[Category:GO:0000287_!_magnesium_ion_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0000287_!_magnesium_ion_binding GO:0000287]
GO:0000287
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magnesium ion binding
magnesium ion binding
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
GO_REF:0000002
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR012000 InterPro:IPR012000]
InterPro:IPR012000
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F
F
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[[Category:GO:0003824_!_catalytic_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003824_!_catalytic_activity GO:0003824]
GO:0003824
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catalytic activity
catalytic activity
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
GO_REF:0000002
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR011766 InterPro:IPR011766]
InterPro:IPR011766
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F
F
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[[Category:GO:0008949_!_oxalyl-CoA_decarboxylase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008949_!_oxalyl-CoA_decarboxylase_activity GO:0008949]
GO:0008949
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oxalyl-CoA decarboxylase activity
oxalyl-CoA decarboxylase activity
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000003 GO_REF:0000003]
GO_REF:0000003
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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[http://www.expasy.org/cgi-bin/nicezyme.pl?4.1.1.8 EC:4.1.1.8]
EC:4.1.1.8
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F
F
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[[Category:GO:0016829_!_lyase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016829_!_lyase_activity GO:0016829]
GO:0016829
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lyase activity
lyase activity
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
GO_REF:0000004
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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[http://www.uniprot.org/keywords/KW-0456 SP_KW:KW-0456]
SP_KW:KW-0456
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F
F
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[[Category:GO:0016831_!_carboxy-lyase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016831_!_carboxy-lyase_activity GO:0016831]
GO:0016831
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carboxy-lyase activity
carboxy-lyase activity
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
GO_REF:0000004
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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[http://www.uniprot.org/keywords/KW-0210 SP_KW:KW-0210]
SP_KW:KW-0210
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F
F
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[[Category:GO:0030976_!_thiamin_pyrophosphate_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0030976_!_thiamin_pyrophosphate_binding GO:0030976]
GO:0030976
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thiamin pyrophosphate binding
thiamin pyrophosphate binding
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
GO_REF:0000002<br />GO_REF:0000002<br />GO_REF:0000002
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IEA: Inferred from Electronic Annotation
IEA: Inferred from Electronic Annotation
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[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR011766 InterPro:IPR011766]<br />[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR012000 InterPro:IPR012000]<br />[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR012001 InterPro:IPR012001]
InterPro:IPR011766<br />InterPro:IPR012000<br />InterPro:IPR012001
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F
F
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Protein
Protein
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[[rrmA:Gene_Product(s)|rrmA]]<br />
rrmA<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1142672 EBI-1142672]<br />  
PMID:16606699
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Experiment(s):EBI-1142672<br />  
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Protein
Protein
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[[uvrY:Gene_Product(s)|uvrY]]<br />
uvrY<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1142672 EBI-1142672]<br />  
PMID:16606699
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Experiment(s):EBI-1142672<br />  
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Protein
Protein
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[[hchA:Gene_Product(s)|hchA]]<br />
hchA<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1142672 EBI-1142672]<br />  
PMID:16606699
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Experiment(s):EBI-1142672<br />  
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Protein
Protein
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[[nadE:Gene_Product(s)|nadE]]<br />
nadE<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1142672 EBI-1142672]<br />  
PMID:16606699
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Experiment(s):EBI-1142672<br />  


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<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span>
<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span>
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<span id="Structure"></span><big>'''Structure'''</big>
<span id="Structure"></span><big>'''Structure'''</big>
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==References==
==References==
{{BacktoTop}}
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{{RefHelp}}
 
<references/>
<references/>
__NOTOC__
__NOTOC__

Revision as of 22:02, 16 February 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Oxc

Synonyms

predicted oxalyl-CoA decarboxylase[1], B2373[2][1], YfdU[2][1], Oxc[2][1]

Product description

predicted oxalyl-CoA decarboxylase[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0000287

magnesium ion binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012000

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0003824

catalytic activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011766

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0008949

oxalyl-CoA decarboxylase activity

GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:4.1.1.8

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0016829

lyase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0456

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0016831

carboxy-lyase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0210

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0030976

thiamin pyrophosphate binding

GO_REF:0000002
GO_REF:0000002
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011766
InterPro:IPR012000
InterPro:IPR012001

F

Seeded from EcoCyc 12.5 [4]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rrmA

PMID:16606699[5]

Experiment(s):EBI-1142672

Protein

uvrY

PMID:16606699[5]

Experiment(s):EBI-1142672

Protein

hchA

PMID:16606699[5]

Experiment(s):EBI-1142672

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1142672

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MSDQLQMTDG MHIIVEALKQ NNIDTIYGVV GIPVTDMARH AQAEGIRYIG FRHEQSAGYA
AAASGFLTQK PGICLTVSAP GFLNGLTALA NATVNGFPMI MISGSSDRAI VDLQQGDYEE
LDQMNAAKPY AKAAFRVNQP QDLGIALARA IRVSVSGRPG GVYLDLPANV LAATMEKDEA
LTTIVKVENP SPALLPCPKS VTSAISLLAK AERPLIILGK GAAYSQADEQ LREFIESAQI
PFLPMSMAKG ILEDTHPLSA AAARSFALAN ADVVMLVGAR LNWLLAHGKK GWAADTQFIQ
LDIEPQEIDS NRPIAVPVVG DIASSMQGML AELKQNTFTT PLVWRDILNI HKQQNAQKMH
EKLSTDTQPL NYFNALSAVR DVLRENQDIY LVNEGANTLD NARNIIDMYK PRRRLDCGTW
GVMGIGMGYA IGASVTSGSP VVAIEGDSAF GFSGMEIETI CRYNLPVTIV IFNNGGIYRG
DGVDLSGAGA PSPTDLLHHA RYDKLMDAFR GVGYNVTTTD ELRHALTTGI QSRKPTIINV
VIDPAAGTES GHITKLNPKQ VAGN
Mol. Wt

60.58 kDa (calc) [2]

pI
Extinction coefficient

44350 - 44850 (calc based on 15 Y, 4 W, and 4 C residues)

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Domains/Motifs/Modification Sites See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
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Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure>oxc 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7236-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P0AFI0

UniProt (EcoliWiki Page)

UniProt:P0AFI0

PFAM (EcoliWiki Page)

PFAM:PF02776

RefSeq (EcoliWiki Page)

RefSeq:NP_416874

ModBase (EcoliWiki Page)

ModBase:P0AFI0


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Notes

Links

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Name URL Comments
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References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 4.3 4.4 4.5 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ 5.0 5.1 5.2 5.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed


Categories

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