ybaP:Gene Product(s): Difference between revisions

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<big>'''Gene Ontology'''</big><br />{{Product_GO_help}}<!--box uid=421aa90e079fa326b6494f812ad13e79.20635.W46aa32b54fb90-->
<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.20635.W46aa32b54fb90-->
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Protein
Protein
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[[ybaK:Gene_Product(s)|ybaK]]<br />
ybaK<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
|[[PMID:16606699]]<ref name=PMID:16606699/>
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1136849 EBI-1136849]<br />  
Experiment(s):EBI-1136849<br />  
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Protein
Protein
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[[appY:Gene_Product(s)|appY]]<br />
appY<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
|[[PMID:16606699]]<ref name=PMID:16606699/>
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1136849 EBI-1136849]<br />  
Experiment(s):EBI-1136849<br />  
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Protein
Protein
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[[sucB:Gene_Product(s)|sucB]]<br />
sucB<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
|[[PMID:16606699]]<ref name=PMID:16606699/>
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1136849 EBI-1136849]<br />  
Experiment(s):EBI-1136849<br />  
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Protein
Protein
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[[carA:Gene_Product(s)|carA]]<br />
carA<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
|[[PMID:16606699]]<ref name=PMID:16606699/>
|
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1136849 EBI-1136849]<br />  
Experiment(s):EBI-1136849<br />  
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Protein
Protein
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[[zwf:Gene_Product(s)|zwf]]<br />
zwf<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
|[[PMID:16606699]]<ref name=PMID:16606699/>
|
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1136849 EBI-1136849]<br />  
Experiment(s):EBI-1136849<br />  
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Protein
Protein
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[[tatE:Gene_Product(s)|tatE]]<br />
tatE<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
|[[PMID:16606699]]<ref name=PMID:16606699/>
|
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Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1136849 EBI-1136849]<br />  
Experiment(s):EBI-1136849<br />  
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Protein
Protein
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[[glpD:Gene_Product(s)|glpD]]<br />
glpD<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
|[[PMID:16606699]]<ref name=PMID:16606699/>
|
|
Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1136849 EBI-1136849]<br />  
Experiment(s):EBI-1136849<br />  
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Protein
Protein
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[[groL:Gene_Product(s)|groL]]<br />
groL<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
|[[PMID:16606699]]<ref name=PMID:16606699/>
|
|
Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1136849 EBI-1136849]<br />  
Experiment(s):EBI-1136849<br />  
|-  
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Protein
Protein
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[[dnaK:Gene_Product(s)|dnaK]]<br />
dnaK<br />
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|


|[[PMID:16606699]]<ref name=PMID:16606699/>
|[[PMID:16606699]]<ref name=PMID:16606699/>
|
|
Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1136849 EBI-1136849]<br />  
Experiment(s):EBI-1136849<br />  
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Protein
Protein
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[[sdhA:Gene_Product(s)|sdhA]]<br />
sdhA<br />
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|[[PMID:16606699]]<ref name=PMID:16606699/>
|[[PMID:16606699]]<ref name=PMID:16606699/>
|
|
Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1136849 EBI-1136849]<br />  
Experiment(s):EBI-1136849<br />  
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Protein
Protein
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[[hisJ:Gene_Product(s)|hisJ]]<br />
hisJ<br />
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|


|[[PMID:16606699]]<ref name=PMID:16606699/>
|[[PMID:16606699]]<ref name=PMID:16606699/>
|
|
Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1136849 EBI-1136849]<br />  
Experiment(s):EBI-1136849<br />  
|-  
|-  
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Protein
Protein
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[[yibK:Gene_Product(s)|yibK]]<br />
yibK<br />
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|


|[[PMID:16606699]]<ref name=PMID:16606699/>
|[[PMID:16606699]]<ref name=PMID:16606699/>
|
|
Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1136849 EBI-1136849]<br />  
Experiment(s):EBI-1136849<br />  


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===Notes===
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<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span>
<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span>
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<span id="Structure"></span><big>'''Structure'''</big>
<span id="Structure"></span><big>'''Structure'''</big>
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==References==
==References==
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<references/>
<references/>
__NOTOC__
__NOTOC__

Revision as of 23:21, 9 February 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbaP

Synonyms

conserved protein[1], B0482[2][1], YbaP[2][1]

Product description

putative ligase[2]; conserved protein[3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ybaK

 PMID:16606699[4]

Experiment(s):EBI-1136849

Protein

appY

 PMID:16606699[4]

Experiment(s):EBI-1136849

Protein

sucB

 PMID:16606699[4]

Experiment(s):EBI-1136849

Protein

carA

 PMID:16606699[4]

Experiment(s):EBI-1136849

Protein

zwf

 PMID:16606699[4]

Experiment(s):EBI-1136849

Protein

tatE

 PMID:16606699[4]

Experiment(s):EBI-1136849

Protein

glpD

 PMID:16606699[4]

Experiment(s):EBI-1136849

Protein

groL

 PMID:16606699[4]

Experiment(s):EBI-1136849

Protein

dnaK

 PMID:16606699[4]

Experiment(s):EBI-1136849

Protein

sdhA

 PMID:16606699[4]

Experiment(s):EBI-1136849

Protein

hisJ

 PMID:16606699[4]

Experiment(s):EBI-1136849

Protein

yibK

 PMID:16606699[4]

Experiment(s):EBI-1136849

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MDLLYRVKTL WAALRGNHYT WPAIDITLPG NRHFHLIGSI HMGSHDMAPL PTRLLKKLKN
ADALIVEADV STSDTPFANL PACEALEERI SEEQLQNLQH ISQEMGISPS LFSTQPLWQI
AMVLQATQAQ KLGLRAEYGI DYQLLQAAKQ QHKPVIELEG AENQIAMLLQ LPDKGLALLD
DTLTHWHTNA RLLQQMMSWW LNAPPQNNDI TLPNTFSQSL YDVLMHQRNL AWRDKLRAMP
PGRYVVAVGA LHLYGEGNLP QMLR
Mol. Wt

29.9 kDa (calc) [2]

pI
Extinction coefficient

48930 - 49055 (calc based on 7 Y, 7 W, and 1 C residues)

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Domains/Motifs/Modification Sites See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
edit table


Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure>ybaP 562</beststructure>

Models

View models at:

edit table


Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6258-MONOMER

UniProt (EcoliWiki Page)

UniProt:P77301

PFAM (EcoliWiki Page)

PFAM:PF07446

RefSeq (EcoliWiki Page)

RefSeq:NP_415015


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Notes

Links

[back to top]


Name URL Comments
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References

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  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 4.11 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed


Categories

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