metI:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
imported>Wikientrybot
touch interactions table
imported>Wikientrybot
Move help links into the <above> tag inside templates.
Line 61: Line 61:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.T46aa22e9ca339-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.T46aa22e9ca339-->
{{Product_nomenclature_help}}
 
<protect><!--Nomenclature_notes--></protect>
<protect><!--Nomenclature_notes--></protect>
===Notes===
===Notes===
Line 69: Line 69:
{{BacktoTop}}
{{BacktoTop}}
<protect>
<protect>
<big>'''Gene Ontology'''</big><br />{{Product_GO_help}}<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.O46aa22eb3411d-->
<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.19981.O46aa22eb3411d-->
<!--
<!--
******************************************************************************************
******************************************************************************************
Line 207: Line 207:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.X46aa22eba3a7b-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.X46aa22eba3a7b-->
{{Product_interactions_help}}
 
<!--Function_notes--></protect>
<!--Function_notes--></protect>
===Notes===
===Notes===
Line 246: Line 246:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.W46aa22ecac311-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.W46aa22ecac311-->
{{Product_localization_help}}
 
<protect><!--Localization_notes--></protect>
<protect><!--Localization_notes--></protect>


Line 290: Line 290:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.L46aa22ee1ca7e-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.L46aa22ee1ca7e-->
{{Product_physical_properties_help}}
 


<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span>
<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span>
Line 366: Line 366:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.B46aa22ee74f11-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.B46aa22ee74f11-->
{{Product_domains_motifs_help}}
 
</td>
</td>
<td>
<td>
Line 405: Line 405:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.C46a7b41f3295a-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.C46a7b41f3295a-->
{{Product_structure_help}}
 
<!--Structure_notes--></protect>
<!--Structure_notes--></protect>
===Notes===
===Notes===
Line 427: Line 427:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.Z46aa22ef13e29-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.Z46aa22ef13e29-->
{{Product_resources_help}}
 
<protect><!--Resources_notes--></protect>
<protect><!--Resources_notes--></protect>
===Notes===
===Notes===
Line 477: Line 477:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.D46aa22ef5cfa3-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.D46aa22ef5cfa3-->
{{Product_accessions_help}}
 
<protect><!--Accessions_notes--></protect>
<protect><!--Accessions_notes--></protect>
===Notes===
===Notes===
Line 499: Line 499:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.L46a7b421b7003-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.19981.L46a7b421b7003-->
{{Links_help}}
 




Line 506: Line 506:
==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
 
<references/>
<references/>
__NOTOC__
__NOTOC__

Revision as of 23:05, 9 February 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

MetI

Synonyms

DL-methionine transporter subunit[1], membrane component protein of ABC superfamily[1], B0198[2][1], MetD[2][1], MetI[2][1], YaeE[2][1]

Product description

MetI[2][3];

Component of L- and D-methionine uptake ABC permease[2][3]

EC number (for enzymes)
edit table


Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0005215

transporter activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000515

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0006810

transport

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000515
SP_KW:KW-0813

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006865

amino acid transport

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0029

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0016020

membrane

GO_REF:0000002
GO_REF:0000004
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR000515
SP_KW:KW-0397
SP_KW:KW-0472

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0016021

integral to membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc 12.5 [4]

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of L- and D-methionine uptake ABC permease

could be indirect


edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes

plasma membrane

C-terminus localized in the cytoplasm with 5 predicted transmembrane domains

Daley et al. (2005) [5]

plasma membrane

From EcoCyc[3]

edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MSEPMMWLLV RGVWETLAMT FVSGFFGFVI GLPVGVLLYV TRPGQIIANA KLYRTVSAIV
NIFRSIPFII LLVWMIPFTR VIVGTSIGLQ AAIVPLTVGA APFIARMVEN ALLEIPTGLI
EASRAMGATP MQIVRKVLLP EALPGLVNAA TITLITLVGY SAMGGAVGAG GLGQIGYQYG
YIGYNATVMN TVLVLLVILV YLIQFAGDRI VRAVTRK
Mol. Wt

23.26 kDa (calc) [2]

pI
Extinction coefficient

28420 (calc based on 8 Y, 3 W, and 0 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes

Domain

13 - 204

ABC transmembrane type-1

UniProt:P31547

Domain

181 - 203

Predicted membrane-spanning helix.

TMD predicted by TMHMM[6]

Domain

144 - 166

Predicted membrane-spanning helix.

TMD predicted by TMHMM[6]

Domain

18 - 40

Predicted membrane-spanning helix.

TMD predicted by TMHMM[6]

Domain

60 - 78

Predicted membrane-spanning helix.

TMD predicted by TMHMM[6]

Domain

82 - 104

Predicted membrane-spanning helix.

TMD predicted by TMHMM[6]

edit table

tmhmm.php?gene=metI&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure>metI 562</beststructure>

Models

View models at:

edit table


Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:METI-MONOMER

UniProt (EcoliWiki Page)

UniProt:P31547

PFAM (EcoliWiki Page)

PFAM:PF00528

RefSeq (EcoliWiki Page)

RefSeq:NP_414740


edit table


Notes

Links

[back to top]


Name URL Comments
edit table



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 4.3 4.4 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 Krogh, A et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 567-80 PubMed


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=metI:Gene_Product(s)&oldid=709233"