sbcC:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF02463 PFAM:PF02463]
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF02463 PFAM:PF02463]
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
 
<references/>
<references/>
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<noinclude>

Revision as of 08:06, 6 February 2009

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000025304 (score: 1.000; bootstrap: 73%)
  • ENSANGP00000009410 (score: 0.345)
  • ENSANGP00000013163 (score: 0.130)
  • ENSANGP00000028462 (score: 0.101)
  • ENSANGP00000029072 (score: 0.087)
  • ENSANGP00000012395 (score: 0.081)
  • ENSANGP00000026915 (score: 0.079)
  • ENSANGP00000012515 (score: 0.076)
  • ENSANGP00000014553 (score: 0.069)
  • ENSANGP00000012681 (score: 0.067)
  • ENSANGP00000003753 (score: 0.054)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G48600 (score: 1.000; bootstrap: 70%)
  • AT3G54670 (score: 0.110)
  • AT5G62410 (score: 0.068)
  • AT3G47460 (score: 0.066)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00028930 (score: 1.000; bootstrap: 51%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00003367 (score: 1.000; bootstrap: 59%)
  • WBGene00004873 (score: 0.063)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000019358 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000019902 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000019916 (score: 0.976)
  • ENSCINP00000002997 (score: 0.095)
  • ENSCINP00000019026 (score: 0.072)
  • ENSCINP00000001565 (score: 0.068)
  • ENSCINP00000016764 (score: 0.066)
  • ENSCINP00000000142 (score: 0.054)
  • ENSCINP00000000143 (score: 0.051)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030408-4 (score: 1.000; bootstrap: 65%)
  • ZDB-CDNA-040425-456 (score: 0.898)
  • ZDB-GENE-030429-36 (score: 0.064)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0029688 (score: 1.000; bootstrap: 54%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000025260 (score: 1.000; bootstrap: 64%)
  • ENSGALP00000013963 (score: 0.084)
  • ENSGALP00000015535 (score: 0.052)

From Inparanoid:20070104

Mus musculus

  • MGI:3045962 (score: 1.000; bootstrap: 73%)
  • MGI:3529431 (score: 0.200)
  • MGI:108084 (score: 0.094)

From Inparanoid:20070104

Oryza gramene

  • Q7F099 (score: 1.000; bootstrap: 50%)
  • Q84VF9 (score: 0.599)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000046513 (score: 1.000; bootstrap: 62%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000046012 (score: 1.000; bootstrap: 72%)
  • ENSRNOP00000029356 (score: 0.121)
  • ENSRNOP00000012373 (score: 0.059)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YFR031C (score: 1.000; bootstrap: 66%)
  • YJL074C (score: 0.093)
  • YFL008W (score: 0.075)
  • YLR086W (score: 0.070)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC14864c (score: 1.000; bootstrap: 100%)
  • SPCC1628c (score: 0.081)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000156381 (score: 1.000; bootstrap: 72%)
  • NEWSINFRUP00000157894 (score: 0.517)
  • NEWSINFRUP00000174922 (score: 0.507)
  • NEWSINFRUP00000163156 (score: 0.507)
  • NEWSINFRUP00000180129 (score: 0.497)
  • NEWSINFRUP00000143265 (score: 0.488)
  • NEWSINFRUP00000179462 (score: 0.483)
  • NEWSINFRUP00000151248 (score: 0.481)
  • NEWSINFRUP00000132857 (score: 0.444)
  • NEWSINFRUP00000150658 (score: 0.361)
  • NEWSINFRUP00000168713 (score: 0.243)
  • NEWSINFRUP00000163074 (score: 0.241)
  • NEWSINFRUP00000173334 (score: 0.217)
  • NEWSINFRUP00000163073 (score: 0.215)
  • NEWSINFRUP00000148968 (score: 0.208)
  • NEWSINFRUP00000161111 (score: 0.198)
  • NEWSINFRUP00000179678 (score: 0.159)
  • NEWSINFRUP00000166748 (score: 0.156)
  • NEWSINFRUP00000178792 (score: 0.144)
  • NEWSINFRUP00000172455 (score: 0.138)
  • NEWSINFRUP00000177516 (score: 0.101)
  • NEWSINFRUP00000163147 (score: 0.100)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000040488 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

SBCC

From SHIGELLACYC

E. coli O157

SBCC

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF02463


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Notes

Links

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Name URL Comments
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References

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Categories

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