adrA:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
imported>Wikientrybot
touch interactions table
imported>Wikientrybot
Move help links into the <above> tag inside templates.
Line 59: Line 59:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.F46aa2c40893ea-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.F46aa2c40893ea-->
{{Product_nomenclature_help}}
 
<protect><!--Nomenclature_notes--></protect>
<protect><!--Nomenclature_notes--></protect>
===Notes===
===Notes===
Line 67: Line 67:
{{BacktoTop}}
{{BacktoTop}}
<protect>
<protect>
<big>'''Gene Ontology'''</big><br />{{Product_GO_help}}<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.P46aa2c4182676-->
<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.20390.P46aa2c4182676-->
<!--
<!--
******************************************************************************************
******************************************************************************************
Line 137: Line 137:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.O46aa2c41f2827-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.O46aa2c41f2827-->
{{Product_interactions_help}}
 
<!--Function_notes--></protect>
<!--Function_notes--></protect>
===Notes===
===Notes===
Line 167: Line 167:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.F46aa2c42a32ce-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.F46aa2c42a32ce-->
{{Product_localization_help}}
 
<protect><!--Localization_notes--></protect>
<protect><!--Localization_notes--></protect>


Line 214: Line 214:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.M46aa2c4414e55-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.M46aa2c4414e55-->
{{Product_physical_properties_help}}
 


<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span>
<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span>
Line 241: Line 241:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.V46aa2c446e27b-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.V46aa2c446e27b-->
{{Product_domains_motifs_help}}
 


<span id="Structure"></span><big>'''Structure'''</big>
<span id="Structure"></span><big>'''Structure'''</big>
Line 274: Line 274:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.Y46a7bd926f067-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.Y46a7bd926f067-->
{{Product_structure_help}}
 
<!--Structure_notes--></protect>
<!--Structure_notes--></protect>
===Notes===
===Notes===
Line 296: Line 296:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.H46aa2c450e78c-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.H46aa2c450e78c-->
{{Product_resources_help}}
 
<protect><!--Resources_notes--></protect>
<protect><!--Resources_notes--></protect>
===Notes===
===Notes===
Line 346: Line 346:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.I46aa2c4558ff6-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.I46aa2c4558ff6-->
{{Product_accessions_help}}
 
<protect><!--Accessions_notes--></protect>
<protect><!--Accessions_notes--></protect>
===Notes===
===Notes===
Line 368: Line 368:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.G46a7bd950eb9b-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.20390.G46a7bd950eb9b-->
{{Links_help}}
 




Line 375: Line 375:
==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
 
<references/>
<references/>
__NOTOC__
__NOTOC__

Revision as of 03:09, 5 February 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YaiC

Synonyms

predicted diguanylate cyclase[1], AdrA[2][1], YaiC[2][1], B0385[2][1]

Product description

predicted diguanylate cyclase[2][3]

EC number (for enzymes)
edit table


Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016020

membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc 12.5 [4]

complete

GO:0016021

integral to membrane

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc 12.5 [4]

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Notes

membrane

From EcoCyc[3]

edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MFPKIMNDEN FFKKAAAHGE EPPLTPQNEH QRSGLRFARR VRLPRAVGLA GMFLPIASTL
VSHPPPGWWW LVLVGWAFVW PHLAWQIASR AVDPLSREIY NLKTDAVLAG MWVGVMGVNV
LPSTAMLMIM CLNLMGAGGP RLFVAGLVLM VVSCLVTLEL TGITVSFNSA PLEWWLSLPI
IVIYPLLFGW VSYQTATKLA EHKRRLQVMS TRDGMTGVYN RRHWETMLRN EFDNCRRHNR
DATLLIIDID HFKSINDTWG HDVGDEAIVA LTRQLQITLR GSDVIGRFGG DEFAVIMSGT
PAESAITAML RVHEGLNTLR LPNTPQVTLR ISVGVAPLNP QMSHYREWLK SADLALYKAK
KAGRNRTEVA A
Mol. Wt

41.54 kDa (calc) [2]

pI
Extinction coefficient

80440 - 80815 (calc based on 6 Y, 13 W, and 3 C residues)

edit table


Domains/Motifs/Modification Sites See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes

Domain

240 - 371

GGDEF

UniProt:P0AAP1

edit table


Structure See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure>adrA 562</beststructure>

Models

View models at:

edit table


Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG11257-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0AAP1

PFAM (EcoliWiki Page)

PFAM:PF05230

RefSeq (EcoliWiki Page)

RefSeq:NP_414919


edit table


Notes

Links

[back to top]


Name URL Comments
edit table



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=adrA:Gene_Product(s)&oldid=672094"