yagF:Gene Product(s): Difference between revisions

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Revision as of 23:33, 30 January 2009

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YagF

Synonyms

CP4-6 prophage; predicted dehydratase[1], B0269[2][1], YagF[2][1]

Product description

putative dehydratase[2]; CP4-6 prophage; predicted dehydratase[3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki. See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0016829

lyase activity

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0456

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0008152

metabolic process

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000581

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0003824

catalytic activity

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000581

F

Seeded from EcoCyc 12.5 [4]

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MTIEKIFTPQ DDAFYAVITH AAGPQGALPL TPQMLMESPS GNLFGMTQNA GMGWDANKLT
GKEVLIIGTQ GGIRAGDGRP IALGYHTGHW EIGMQMQAAA KEITRNGGIP FAAFVSDPCD
GRSQGTHGMF DSLPYRNDAA IVFRRLIRSL PTRRAVIGVA TCDKGLPATM IALAAMHDLP
TILVPGGATL PPTVGEDAGK VQTIGARFAN HELSLQEAAE LGCRACASPG GGCQFLGTAG
TSQVVAEALG LALPHSALAP SGQAVWLEIA RQSARAVSEL DSRGITTRDI LSDKAIENAM
VIHAAFGGST NLLLHIPAIA HAAGCTIPDV EHWTRINRKV PRLVSVLPNG PDYHPTVRAF
LAGGVPEVML HLRDLGLLHL DAMTVTGQTV GENLEWWQAS ERRARFRQCL REQDGVEPDD
VILPPEKAKA KGLTSTVCFP TGNIAPEGSV IKATAIDPSV VGEDGVYHHT GRVRVFVSEA
QAIKAIKREE IVQGDIMVVI GGGPSGTGME ETYQLTSALK HISWGKTVSL ITDARFSGVS
TGACFGHVSP EALAGGPIGK LRDNDIIEIA VDRLTLTGSV NFIGTADNPL TPEEGARELA
RRQTHPDLHA HDFLPDDTRL WAALQSVSGG TWKGCIYDTD KIIEVINAGK KALGI
Mol. Wt

69.4 kDa (calc) [2]

pI
Extinction coefficient

59930 - 61180 (calc based on 7 Y, 9 W, and 10 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes
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Structure

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Structures

<beststructure>yagF 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6141-MONOMER

UniProt (EcoliWiki Page)

UniProt:P77596

PFAM (EcoliWiki Page)

PFAM:PF00920

RefSeq (EcoliWiki Page)

RefSeq:NP_414803


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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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