amiD:Gene Product(s): Difference between revisions

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N-acetylmuramoyl-L-alanine amidase activity
N-acetylmuramoyl-L-alanine amidase activity
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|[[PMID:17526703]]<ref name=PMID:17526703/>
[[PMID:17526703]]<ref name=PMID:17526703/>
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IDA: Inferred from Direct Assay
IDA: Inferred from Direct Assay
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outer membrane
outer membrane
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|[[PMID:17526703]]<ref name=PMID:17526703/>
[[PMID:17526703]]<ref name=PMID:17526703/>
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IDA: Inferred from Direct Assay
IDA: Inferred from Direct Assay
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zinc ion binding
zinc ion binding
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|[[PMID:17526703]]<ref name=PMID:17526703/>
[[PMID:17526703]]<ref name=PMID:17526703/>
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IDA: Inferred from Direct Assay
IDA: Inferred from Direct Assay
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Revision as of 17:43, 29 January 2009

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbjR

Synonyms

predicted amidase and lipoprotein[1], YbjR[2][1], B0867[2][1]

Product description

predicted amidase and lipoprotein[2][3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki. See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0008745

N-acetylmuramoyl-L-alanine amidase activity

PMID:17526703[4]

IDA: Inferred from Direct Assay

F

complete

GO:0019867

outer membrane

PMID:17526703[4]

IDA: Inferred from Direct Assay

C

complete

GO:0008270

zinc ion binding

PMID:17526703[4]

IDA: Inferred from Direct Assay

F

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References
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Notes

Localization

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Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Sequence

at EcoCyc 

MRRFFWLVAA ALLLAGCAGE KGIVEKEGYQ LDTRRQAQAA YPRIKVLVIH YTADDFDSSL
ATLTDKQVSS HYLVPAVPPR YNGKPRIWQL VPEQELAWHA GISAWRGATR LNDTSIGIEL
ENRGWQKSAG VKYFAPFEPA QIQALIPLAK DIIARYHIKP ENVVAHADIA PQRKDDPGPL
FPWQQLAQQG IGAWPDAQRV NFYLAGRAPH TPVDTASLLE LLARYGYDVK PDMTPREQRR
VIMAFQMHFR PTLYNGEADA ETQAIAEALL EKYGQD
Mol. Wt

31.07 kDa (calc) [2]

pI
Extinction coefficient

56380 - 56505 (calc based on 12 Y, 7 W, and 1 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes
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Structure

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure>ybjR 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6452-MONOMER

SwissModel (EcoliWiki Page)

SwissModel:P75820

UniProt (EcoliWiki Page)

UniProt:P75820

PFAM (EcoliWiki Page)

PFAM:PF01510

RefSeq (EcoliWiki Page)

RefSeq:NP_415388

ModBase (EcoliWiki Page)

ModBase:P75820


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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 Uehara, T & Park, JT (2007) An anhydro-N-acetylmuramyl-L-alanine amidase with broad specificity tethered to the outer membrane of Escherichia coli. J. Bacteriol. 189 5634-41 PubMed


Categories

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