rplE:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Edited by wikibot
imported>Wikientrybot
Move help links into the <above> tag inside templates.
Line 25: Line 25:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|class = 'sortable' {{Prettytable}} id='212584'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
|
|
''Anopheles gambiae''   
''Anopheles gambiae''   
Line 39: Line 39:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Apis mellifera''   
''Apis mellifera''   
Line 46: Line 46:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
Line 53: Line 53:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Bos taurus''   
''Bos taurus''   
Line 61: Line 61:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
Line 69: Line 69:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
Line 77: Line 77:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Canis familiaris''   
''Canis familiaris''   
Line 86: Line 86:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Ciona intestinalis''   
''Ciona intestinalis''   
Line 93: Line 93:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Danio rerio''   
''Danio rerio''   
Line 101: Line 101:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
Line 108: Line 108:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Drosophila melanogaster''   
''Drosophila melanogaster''   
Line 115: Line 115:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Gallus gallus''   
''Gallus gallus''   
Line 122: Line 122:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Homo sapiens''   
''Homo sapiens''   
Line 129: Line 129:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Monodelphis domestica''   
''Monodelphis domestica''   
Line 136: Line 136:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Mus musculus''   
''Mus musculus''   
Line 145: Line 145:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Oryza gramene''   
''Oryza gramene''   
Line 152: Line 152:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Rattus norvegicus''   
''Rattus norvegicus''   
Line 161: Line 161:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
Line 168: Line 168:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
Line 175: Line 175:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Takifugu rubripes''   
''Takifugu rubripes''   
Line 182: Line 182:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
Line 190: Line 190:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Xenopus tropicalis''   
''Xenopus tropicalis''   
Line 197: Line 197:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Shigella flexneri''   
''Shigella flexneri''   
Line 204: Line 204:
|
|
From SHIGELLACYC  
From SHIGELLACYC  
|-
|-  
|
|
''E. coli'' O157  
''E. coli'' O157  
Line 211: Line 211:
|
|
From ECOO157CYC  
From ECOO157CYC  
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.50575.Q46abfb8a5b370&page=50575&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.50575.Q46abfb8a5b370&page=50575&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.50575.Q46abfb8a5b370-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.50575.Q46abfb8a5b370-->
{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
Line 232: Line 233:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' {{Prettytable}} id='212585'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00281 PFAM:PF00281]
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00281 PFAM:PF00281]
|
|
   
   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.50575.H46abfbb385428&page=50575&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.50575.H46abfbb385428&page=50575&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.50575.H46abfbb385428-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.50575.H46abfbb385428-->
{{Evolution_families_table_help}}
 
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
Line 260: Line 262:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='114524'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Name!!URL!!Comments
!|Name!!URL!!Comments
 
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.50575.H46a83b6b8042f&page=50575&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.50575.H46a83b6b8042f&page=50575&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.50575.H46a83b6b8042f-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.50575.H46a83b6b8042f-->
{{Links_help}}
 


==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
 
<references/>
<references/>
<noinclude>
<noinclude>

Revision as of 21:57, 21 January 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000028292 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000014188 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G01310 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000027850 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000033099 (score: 0.399)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00034687 (score: 1.000; bootstrap: 100%)
  • WBGene00024572 (score: 0.914)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004423 (score: 1.000; bootstrap: 100%)
  • WBGene00004422 (score: 0.917)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000019499 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000018057 (score: 0.762)
  • ENSCAFP00000001168 (score: 0.749)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000006828 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040625-147 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040625-213 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0214853 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0013325 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000006295 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000270799 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000016049 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1914275 (score: 1.000; bootstrap: 100%)
  • MGI:3644073 (score: 0.940)
  • MGI:3644404 (score: 0.917)

From Inparanoid:20070104

Oryza gramene

  • Q9ZST0 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000032903 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000005511 (score: 0.521)
  • ENSRNOP00000034448 (score: 0.459)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR237W (score: 1.000; bootstrap: 92%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC2F122c (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000164953 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00003639001 (score: 1.000; bootstrap: 100%)
  • GSTENP00005881001 (score: 0.436)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000002557 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPLE

From SHIGELLACYC

E. coli O157

RPLE

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00281


edit table


Notes

Links

[back to top]


Name URL Comments
edit table


References

[back to top]




Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=rplE:Evolution&oldid=653488"