tfaX:Gene: Difference between revisions

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!{{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
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''tfaX''  
''tfaX''  
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!{{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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!{{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''ylcE, ECK0555, b0563, JW0552''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''ylcE, ECK0555, b0563, JW0552''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
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!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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MG1655
MG1655
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*[http://biocyc.org/ECOLI/sequence?object=G6317 EcoCyc Sequence Dump]  
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W3110
W3110
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{{GBrowseFastaLink|ecoli_W3110|AC_000091|582098|582283|FASTA Dump}}  
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!Feature type!!Location!!Description
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|[[PMID:16738554]]<ref name=PMID:16738554/>
[[PMID:16738554]]<ref name=PMID:16738554/>
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[[cgscmutation:105700|CGSC:105700]]
[[cgscmutation:105700|CGSC:105700]]
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[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
[http://www.shigen.nig.ac.jp/ecoli/strain/askaCloneQueryAction.do?strainTypeId=9 Shigen]
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|[[PMID:16769691]]<ref name=PMID:16769691/>
[[PMID:16769691]]<ref name=PMID:16769691/>


Status:
Status:
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Primer 2:  
Primer 2:  
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6317 EcoCyc:G6317]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6317 EcoCyc:G6317]
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB4064 EchoBASE:EB4064]
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB4064 EchoBASE:EB4064]
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
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[http://chase.ou.edu/macro/searchlink.php?bnum=b0563 EcoliGenExpDB:b0563]
[http://chase.ou.edu/macro/searchlink.php?bnum=b0563 EcoliGenExpDB:b0563]
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|-
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[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])  
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])  
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[http://BioCyc.org/ECOL199310/new-image?object=C1475 ECOL199310CYC:C1475]
[http://BioCyc.org/ECOL199310/new-image?object=C1475 ECOL199310CYC:C1475]
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
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[http://ecogene.org/geneinfo.php?eg_id=EG14317 EcoGene:EG14317]
[http://ecogene.org/geneinfo.php?eg_id=EG14317 EcoGene:EG14317]
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[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])  
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])  
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[http://BioCyc.org/ECOO157/new-image?object=Z1926 ECOO157CYC:Z1926]
[http://BioCyc.org/ECOO157/new-image?object=Z1926 ECOO157CYC:Z1926]
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==References==
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__NOTOC__
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Revision as of 18:45, 21 January 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Alleles and Phenotypes Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

tfaX

Mnemonic
Synonyms

ylcE, ECK0555, b0563, JW0552[1][2]

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

12.55 minutes 

MG1655: 582098..582283
gbrowse_img.php?coord=581098..583283&genome=ecoli&name=MG1655&trackset=0&width=300&.png

W3110

 

W3110: 582098..582283
gbrowse_img.php?coord=581098..583283&genome=ecoli_W3110&name=W3110&trackset=0&width=300&.png

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature type Location Description
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔylcE772::kan

PMID:16738554[3]

CGSC:105700


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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691[4]

Status:

Primer 1:

Primer 2:

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G6317

EchoBASE (EcoliWiki Page)

EchoBASE:EB4064

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0563

ECOL199310CYC (EcoliWiki Page)

ECOL199310CYC:C1475

EcoGene (EcoliWiki Page)

EcoGene:EG14317

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:Z1926


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Notes

Links

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Name URL Comments
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References

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  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed


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