cstA:Gene Product(s): Difference between revisions

Standard name	CstA
Synonyms	carbon starvation protein^[1], B0598^[2]^[1], YbdC^[2]^[1], CstA^[2]^[1]
Product description	peptide transporter induced by carbon starvation^[2]^[3]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0006950	response to stress	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0346	P	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0009267	cellular response to starvation	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003706	P	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0016020	membrane	GO_REF:0000002 GO_REF:0000004 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR003706 SP_KW:KW-0397 SP_KW:KW-0472	C	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0016021	integral to membrane	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0812	C	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0006810	transport				P	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0042594	response to starvation				P	Seeded from EcoCyc 11.1^[3].	required fields missing
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Interactions

Partner Type	Partner	Notes	References
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Notes

Localization

Compartment	Description	Evidence	Notes
plasma membrane	C-terminus localized in the cytoplasm with 18 predicted transmembrane domains	Daley et al. (2005) ^[5]/>
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MNKSGKYLVW TVLSVMGAFA LGYIALNRGE QINALWIVVA SVCIYLIAYR FYGLYIAKNV LAVDPTRMTP AVRHNDGLDY VPTDKKVLFG HHFAAIAGAG PLVGPVLAAQ MGYLPGMIWL LAGVVLAGAV QDFMVLFVST RRDGRSLGEL VKEEMGPTAG VIALVACFMI MVIILAVLAM IVVKALTHSP WGTYTVAFTI PLALFMGIYL RYLRPGRIGE VSVIGLVFLI FAIISGGWVA ESPTWAPYFD FTGVQLTWML VGYGFVAAVL PVWLLLAPRD YLSTFLKIGT IVGLAVGILI MRPTLTMPAL TKFVDGTGPV WTGNLFPFLF ITIACGAVSG FHALISSGTT PKMLANEGQA CFIGYGGMLM ESFVAIMALV SACIIDPGVY FAMNSPMAVL APAGTADVVA SAAQVVSSWG FSITPDTLNQ IASEVGEQSI ISRAGGAPTL AVGMAYILHG ALGGMMDVAF WYHFAILFEA LFILTAVDAG TRAARFMLQD LLGVVSPGLK RTDSLPANLL ATALCVLAWG YFLHQGVVDP LGGINTLWPL FGIANQMLAG MALMLCAVVL FKMKRQRYAW VALVPTAWLL ICTLTAGWQK AFSPDAKVGF LAIANKFQAM IDSGNIPSQY TESQLAQLVF NNRLDAGLTI FFMVVVVVLA LFSIKTALAA LKDPKPTAKE TPYEPMPENV EEIVAQAKGA H
Mol. Wt	75.11 kDa (calc) ^[2]
pI
Extinction coefficient	120780 - 121780 (calc based on 22 Y, 16 W, and 8 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
Domain	441 - 463	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[6]' />
Domain	468 - 487	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[6]' />
Domain	514 - 533	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[6]' />
Domain	548 - 570	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[6]' />
Domain	577 - 599	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[6]' />
Domain	649 - 671	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[6]' />
Domain	7 - 26	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[6]' />
Domain	32 - 54	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[6]' />
Domain	89 - 111	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[6]' />
Domain	116 - 138	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[6]' />
Domain	159 - 181	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[6]' />
Domain	191 - 213	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[6]' />
Domain	218 - 240	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[6]' />
Domain	255 - 277	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[6]' />
Domain	284 - 306	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[6]' />
Domain	326 - 348	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[6]' />
Domain	361 - 383	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[6]' />
Domain	398 - 420	Predicted membrane-spanning helix.	TMD predicted by TMHMM^[6]' />
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Click the image to view raw output from TMHMM.

Structure

Structures

Models

View models at:

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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:EG10167-MONOMER
UniProt (EcoliWiki Page)	UniProt:P15078
PFAM (EcoliWiki Page)	PFAM:PF02554
RefSeq (EcoliWiki Page)	RefSeq:NP_415130
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 ^4.3 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
↑ ^6.00 ^6.01 ^6.02 ^6.03 ^6.04 ^6.05 ^6.06 ^6.07 ^6.08 ^6.09 ^6.10 ^6.11 ^6.12 ^6.13 ^6.14 ^6.15 ^6.16 ^6.17 Cite error: Invalid <ref> tag; no text was provided for refs named PMID:11152613<ref name=PMID:11152613

@@ Line 40: / Line 40: @@
 !align=left {{table heading style}} |Standard name
 ||
-CstA product
+CstA
 |-
 !align=left {{table heading style}} |Synonyms
 ||
-carbon starvation protein product<ref name='LIB:Riley_2006'/>, B0598 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbdC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CstA product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+carbon starvation protein<ref name='LIB:Riley_2006'/>, B0598<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbdC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CstA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
 |-
 !align=left {{table heading style}} |Product description
@@ Line 235: / Line 235: @@
 C-terminus localized in the cytoplasm with 18 predicted transmembrane domains
 |
-Daley et al. (2005) <ref name=PMID:15919996/>
+Daley et al. (2005) <ref name=[[PMID:15919996]]<ref name=PMID:15919996/>/>
 |
@@ Line 320: / Line 320: @@
 Predicted membrane-spanning helix.
 |
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
+TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='[[PMID:11152613]]<ref name=PMID:11152613/>' />
 |-
 |
@@ Line 329: / Line 329: @@
 Predicted membrane-spanning helix.
 |
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
+TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='[[PMID:11152613]]<ref name=PMID:11152613/>' />
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@@ Line 338: / Line 338: @@
 Predicted membrane-spanning helix.
 |
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
+TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='[[PMID:11152613]]<ref name=PMID:11152613/>' />
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 |
@@ Line 347: / Line 347: @@
 Predicted membrane-spanning helix.
 |
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
+TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='[[PMID:11152613]]<ref name=PMID:11152613/>' />
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 |
@@ Line 356: / Line 356: @@
 Predicted membrane-spanning helix.
 |
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
+TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='[[PMID:11152613]]<ref name=PMID:11152613/>' />
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 |
@@ Line 365: / Line 365: @@
 Predicted membrane-spanning helix.
 |
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
+TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='[[PMID:11152613]]<ref name=PMID:11152613/>' />
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@@ Line 374: / Line 374: @@
 Predicted membrane-spanning helix.
 |
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
+TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='[[PMID:11152613]]<ref name=PMID:11152613/>' />
 |-
 |
@@ Line 383: / Line 383: @@
 Predicted membrane-spanning helix.
 |
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
+TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='[[PMID:11152613]]<ref name=PMID:11152613/>' />
 |-
 |
@@ Line 392: / Line 392: @@
 Predicted membrane-spanning helix.
 |
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
+TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='[[PMID:11152613]]<ref name=PMID:11152613/>' />
 |-
 |
@@ Line 401: / Line 401: @@
 Predicted membrane-spanning helix.
 |
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
+TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='[[PMID:11152613]]<ref name=PMID:11152613/>' />
 |-
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@@ Line 410: / Line 410: @@
 Predicted membrane-spanning helix.
 |
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
+TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='[[PMID:11152613]]<ref name=PMID:11152613/>' />
 |-
 |
@@ Line 419: / Line 419: @@
 Predicted membrane-spanning helix.
 |
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
+TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='[[PMID:11152613]]<ref name=PMID:11152613/>' />
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@@ Line 428: / Line 428: @@
 Predicted membrane-spanning helix.
 |
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
+TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='[[PMID:11152613]]<ref name=PMID:11152613/>' />
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@@ Line 437: / Line 437: @@
 Predicted membrane-spanning helix.
 |
-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
+TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='[[PMID:11152613]]<ref name=PMID:11152613/>' />
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@@ Line 446: / Line 446: @@
 Predicted membrane-spanning helix.
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-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
+TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='[[PMID:11152613]]<ref name=PMID:11152613/>' />
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 |
@@ Line 455: / Line 455: @@
 Predicted membrane-spanning helix.
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-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
+TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='[[PMID:11152613]]<ref name=PMID:11152613/>' />
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@@ Line 464: / Line 464: @@
 Predicted membrane-spanning helix.
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-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
+TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='[[PMID:11152613]]<ref name=PMID:11152613/>' />
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@@ Line 473: / Line 473: @@
 Predicted membrane-spanning helix.
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-TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='PMID:11152613' />
+TMD predicted by [http://www.cbs.dtu.dk/services/TMHMM TMHMM]<ref name='[[PMID:11152613]]<ref name=PMID:11152613/>' />
 |-class='sortbottom'

cstA:Gene Product(s): Difference between revisions

Revision as of 21:51, 12 December 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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cstA:Gene Product(s): Difference between revisions

Revision as of 21:51, 12 December 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

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