amiD:Gene Product(s): Difference between revisions
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status | !|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status | ||
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[[Category:GO:0008745_!_N-acetylmuramoyl-L-alanine_amidase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008745_!_N-acetylmuramoyl-L-alanine_amidase_activity GO:0008745] | |||
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N-acetylmuramoyl-L-alanine amidase activity | |||
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[[PMID:17526703]]<ref name=PMID:17526703/> | |||
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IDA: Inferred from Direct Assay | |||
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F | |||
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complete | |||
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[[Category:GO:0019867_!_outer_membrane]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0019867_!_outer_membrane GO:0019867] | |||
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outer membrane | |||
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[[PMID:17526703]]<ref name=PMID:17526703/> | |||
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IDA: Inferred from Direct Assay | |||
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C | |||
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complete | |||
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[[Category:GO:0008270_!_zinc_ion_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008270_!_zinc_ion_binding GO:0008270] | |||
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zinc ion binding | |||
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[[PMID:17526703]]<ref name=PMID:17526703/> | |||
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IDA: Inferred from Direct Assay | |||
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F | |||
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complete | |||
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Revision as of 20:35, 24 November 2008
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
| Standard name |
YbjR product |
|---|---|
| Synonyms |
predicted amidase and lipoprotein product[1], YbjR product[2][1], B0867 product[2][1] |
| Product description | |
| EC number (for enzymes) |
|
| edit table |
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference(s) | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0008745 |
N-acetylmuramoyl-L-alanine amidase activity |
IDA: Inferred from Direct Assay |
F |
complete | ||||
| GO:0019867 |
outer membrane |
IDA: Inferred from Direct Assay |
C |
complete | ||||
| GO:0008270 |
zinc ion binding |
IDA: Inferred from Direct Assay |
F |
complete | ||||
| edit table |
Interactions
| Partner Type | Partner | Notes | References |
|---|---|---|---|
| edit table |
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Notes
Localization
| Compartment | Description | Evidence | Notes |
|---|---|---|---|
| edit table |
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Notes
Structure and Physical Properties
Physical Properties
| Sequence |
MRRFFWLVAA ALLLAGCAGE KGIVEKEGYQ LDTRRQAQAA YPRIKVLVIH YTADDFDSSL ATLTDKQVSS HYLVPAVPPR YNGKPRIWQL VPEQELAWHA GISAWRGATR LNDTSIGIEL ENRGWQKSAG VKYFAPFEPA QIQALIPLAK DIIARYHIKP ENVVAHADIA PQRKDDPGPL FPWQQLAQQG IGAWPDAQRV NFYLAGRAPH TPVDTASLLE LLARYGYDVK PDMTPREQRR VIMAFQMHFR PTLYNGEADA ETQAIAEALL EKYGQD |
|---|---|
| Mol. Wt |
31.07 kDa (calc) [2] |
| pI | |
| Extinction coefficient |
56380 - 56505 (calc based on 12 Y, 7 W, and 1 C residues) |
| edit table |
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Domains/Motifs/Modification Sites
| Type | Residues | Description | Notes |
|---|---|---|---|
| edit table |
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
Structure
| Structures |
<beststructure>ybjR 562</beststructure> |
|---|---|
| Models |
View models at: |
| edit table |
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.
Notes
Gene Product Resources
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Notes
Accessions in Other Databases
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
See Help:Links_table for how to enter or edit information in this section of EcoliWiki.
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 4.2 Uehara, T & Park, JT (2007) An anhydro-N-acetylmuramyl-L-alanine amidase with broad specificity tethered to the outer membrane of Escherichia coli. J. Bacteriol. 189 5634-41 PubMed
Categories