insK:Gene Product(s): Difference between revisions

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[[Category:GO:0004803_!_transposase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0004803_!_transposase_activity GO:0004803]  
[[Category:GO:0015074_!_DNA_integration]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0015074_!_DNA_integration GO:0015074]
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transposase activity
DNA integration
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
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IEA: Inferred from Electronic Annotation
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[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001584 InterPro:IPR001584]
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F
P
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Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
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required fields missing 
complete
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[[Category:GO:0015074_!_DNA_integration]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0015074_!_DNA_integration GO:0015074]
[[Category:GO:0004803_!_transposase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0004803_!_transposase_activity GO:0004803]  
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DNA integration
transposase activity
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[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
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IEA: Inferred from Electronic Annotation
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[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001584 InterPro:IPR001584]
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P
F
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Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
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complete
required fields missing 


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Revision as of 00:40, 20 November 2008

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

InsK product

Synonyms

IS150 conserved protein InsB product[1], InsK product[2][1], B3558 product[2][1], DinS product[2][1]

Product description

IS150 protein InsB[2][3]

EC number (for enzymes)
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See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0003676

nucleic acid binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012337

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0003677

DNA binding

GO_REF:0000002
GO_REF:0000004

IEA: Inferred from Electronic Annotation

InterPro:IPR001584
SP_KW:KW-0238

F

Seeded from EcoCyc 12.5 [4]

complete

GO:0006310

DNA recombination

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0233

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0006313

transposition, DNA-mediated

GO_REF:0000004
GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0814
SP_KW:KW-0815

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0015074

DNA integration

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001584

P

Seeded from EcoCyc 12.5 [4]

complete

GO:0004803

transposase activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions

Partner Type Partner Notes References
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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes
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See Help:Product_localization for how to add or edit information in this section of EcoliWiki.


Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MKVLNELRQF YPLDELLRAA EIPRSTFYYH LKALSKPDKY ADVKKRISEI YHENRGRYGY
RRVTLSLHRE GKQINHKAVQ RLMGTLSLKA AIKVKRYRSY RGEVGQTAPN VLQRDFKATR
PNEKWVTDVT EFAVNGRKLY LSPVIDLFNN EVISYSLSER PVMNMVENML DQAFKKLNPH
EHPVLHSDQG WQYRMRRYQN ILKEHGIKQS MSRKGNCLDN AVVECFFGTL KSECFYLDEF
SNISELKDAV TEYIEYYNSR RISLKLKGLT PIEYRNQTYM PRV
Mol. Wt

35.17 kDa (calc) [2]

pI
Extinction coefficient

39310 - 39685 (calc based on 19 Y, 2 W, and 3 C residues)

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See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes

Domain

117 - 279

Integrase catalytic

UniProt:P19769

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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Structure

Structures

<beststructure>insK 562</beststructure>

Models

View models at:

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See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Notes

Gene Product Resources

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Resource type Source Notes/Reference
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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7777-MONOMER

UniProt (EcoliWiki Page)

UniProt:P19769

PFAM (EcoliWiki Page)

PFAM:PF00665

RefSeq (EcoliWiki Page)

RefSeq:NP_418015

ModBase (EcoliWiki Page)

ModBase:P19769

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:Z1957-MONOMER


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See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.

Notes

Links

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Name URL Comments
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See Help:Links_table for how to enter or edit information in this section of EcoliWiki.



References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 4.3 4.4 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Categories

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