ispB:Gene Product(s): Difference between revisions

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IPI: Inferred from Physical Interaction
IPI: Inferred from Physical Interaction
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[http://www.ebi.uniprot.org/entry/P60422 UniProtKB:P60422]
[http://www.uniprot.org/uniprot/P60422 UniProtKB:P60422]
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F
F
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Subunits of [[:Category:Complex:octaprenyl diphosphate synthase|octaprenyl diphosphate synthase]]  
Subunits of [[:Category:Complex:octaprenyl diphosphate synthase|octaprenyl diphosphate synthase]]  
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could be indirect   
could be indirect  
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Revision as of 00:32, 20 November 2008

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

IspB product

Synonyms

octaprenyl diphosphate synthase product[1], B3187 product[2][1], Cel product[2][1], YhbD product[2][1], IspB product[2][1]

Product description

OPPSYN-MONOMER[2][3];

Component of ; octaprenyl diphosphate synthase[3]

EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status
GO:0004659

prenyltransferase activity

PMID:11825609[4]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0005515

protein binding

PMID:16606699[6]

IPI: Inferred from Physical Interaction

UniProtKB:P60422

F

Seeded from EcoCyc 12.5 [5]

complete

GO:0016094

polyprenol biosynthetic process

PMID:11108713[7]

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc 12.5 [5]

complete

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

required fields missing

GO:0006744

ubiquinone biosynthetic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

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Interactions

Partner Type Partner Notes References

Protein

Subunits of octaprenyl diphosphate synthase

could be indirect


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Notes

Localization

Compartment Description Evidence Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence

at EcoCyc 

MNLEKINELT AQDMAGVNAA ILEQLNSDVQ LINQLGYYIV SGGGKRIRPM IAVLAARAVG
YEGNAHVTIA ALIEFIHTAT LLHDDVVDES DMRRGKATAN AAFGNAASVL VGDFIYTRAF
QMMTSLGSLK VLEVMSEAVN VIAEGEVLQL MNVNDPDITE ENYMRVIYSK TARLFEAAAQ
CSGILAGCTP EEEKGLQDYG RYLGTAFQLI DDLLDYNADG EQLGKNVGDD LNEGKPTLPL
LHAMHHGTPE QAQMIRTAIE QGNGRHLLEP VLEAMNACGS LEWTRQRAEE EADKAIAALQ
VLPDTPWREA LIGLAHIAVQ RDR
Mol. Wt

35.22 kDa (calc) [2]

pI
Extinction coefficient

24410 - 24785 (calc based on 9 Y, 2 W, and 3 C residues)

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Domains/Motifs/Modification Sites

Type Residues Description Notes
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Structure

Structures

<beststructure>ispB 562</beststructure>

Models

View models at:

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:OPPSYN-MONOMER

UniProt (EcoliWiki Page)

UniProt:P0AD57

PFAM (EcoliWiki Page)

PFAM:PF00348

RefSeq (EcoliWiki Page)

RefSeq:NP_417654

ModBase (EcoliWiki Page)

ModBase:P0AD57


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Notes

Links

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Name URL Comments
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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Pan, JJ et al. (2002) Insight into the activation mechanism of Escherichia coli octaprenyl pyrophosphate synthase derived from pre-steady-state kinetic analysis. Biochim Biophys Acta 1594 64-73 PubMed
  5. ↑ 5.0 5.1 5.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  6. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ Kainou, T et al. (2001) Dimer formation of octaprenyl-diphosphate synthase (IspB) is essential for chain length determination of ubiquinone. J Biol Chem 276 7876-83 PubMed


Categories

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