yagF:Gene Product(s): Difference between revisions

Standard name	YagF product
Synonyms	CP4-6 prophage; predicted dehydratase product^[1], B0269 product^[2]^[1], YagF product^[2]^[1]
Product description	putative dehydratase^[2]; CP4-6 prophage; predicted dehydratase^[3]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0008152	metabolic process	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000581	P	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0003824	catalytic activity	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000581	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0016829	lyase activity	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0456	F	Seeded from EcoCyc 12.5 ^[4]	complete
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Interactions

Partner Type	Partner	Notes
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MTIEKIFTPQ DDAFYAVITH AAGPQGALPL TPQMLMESPS GNLFGMTQNA GMGWDANKLT GKEVLIIGTQ GGIRAGDGRP IALGYHTGHW EIGMQMQAAA KEITRNGGIP FAAFVSDPCD GRSQGTHGMF DSLPYRNDAA IVFRRLIRSL PTRRAVIGVA TCDKGLPATM IALAAMHDLP TILVPGGATL PPTVGEDAGK VQTIGARFAN HELSLQEAAE LGCRACASPG GGCQFLGTAG TSQVVAEALG LALPHSALAP SGQAVWLEIA RQSARAVSEL DSRGITTRDI LSDKAIENAM VIHAAFGGST NLLLHIPAIA HAAGCTIPDV EHWTRINRKV PRLVSVLPNG PDYHPTVRAF LAGGVPEVML HLRDLGLLHL DAMTVTGQTV GENLEWWQAS ERRARFRQCL REQDGVEPDD VILPPEKAKA KGLTSTVCFP TGNIAPEGSV IKATAIDPSV VGEDGVYHHT GRVRVFVSEA QAIKAIKREE IVQGDIMVVI GGGPSGTGME ETYQLTSALK HISWGKTVSL ITDARFSGVS TGACFGHVSP EALAGGPIGK LRDNDIIEIA VDRLTLTGSV NFIGTADNPL TPEEGARELA RRQTHPDLHA HDFLPDDTRL WAALQSVSGG TWKGCIYDTD KIIEVINAGK KALGI
Mol. Wt	69.4 kDa (calc) ^[2]
pI
Extinction coefficient	59930 - 61180 (calc based on 7 Y, 9 W, and 10 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structures

Models

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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:G6141-MONOMER
UniProt (EcoliWiki Page)	UniProt:P77596
PFAM (EcoliWiki Page)	PFAM:PF00920
RefSeq (EcoliWiki Page)	RefSeq:NP_414803
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Notes

Links

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Name	URL	Comments
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References

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↑ ^1.0 ^1.1 ^1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

@@ Line 77: / Line 77: @@
 |- {{table_heading_style}}
 !|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+|-
+|
+|
+[[Category:GO:0008152_!_metabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008152_!_metabolic_process GO:0008152]
+|
+metabolic process
+|
+[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
+|
+IEA: Inferred from Electronic Annotation
+|
+[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000581 InterPro:IPR000581]
+|
+P
+|
+Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+|
+complete
 |-
 |
@@ Line 100: / Line 119: @@
 |
-[[Category:GO:0008152_!_metabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008152_!_metabolic_process GO:0008152]
+[[Category:GO:0016829_!_lyase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016829_!_lyase_activity GO:0016829]
 |
-metabolic process
+lyase activity
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
+[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
 |
 IEA: Inferred from Electronic Annotation
 |
-[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR000581 InterPro:IPR000581]
+[http://www.uniprot.org/keywords/KW-0456 SP_KW:KW-0456]
 |
-P
+F
 |
 Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>

yagF:Gene Product(s): Difference between revisions

Revision as of 06:57, 18 November 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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yagF:Gene Product(s): Difference between revisions

Revision as of 06:57, 18 November 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

Search