prkB:Gene Product(s): Difference between revisions

Standard name	PrkB product
Synonyms	predicted phosphoribulokinase product^[1], B3355 product^[2]^[1], YhfF product^[2]^[1], PrkB product^[2]^[1]
Product description	predicted phosphoribulokinase^[2]^[3]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0009058	biosynthetic process	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006083	P	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0008974	phosphoribulokinase activity	GO_REF:0000002 GO_REF:0000003	IEA: Inferred from Electronic Annotation	InterPro:IPR006082 EC:2.7.1.19	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0005975	carbohydrate metabolic process	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR006082	P	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0005524	ATP binding	GO_REF:0000002 GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR006082 InterPro:IPR006083 SP_KW:KW-0067	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0000166	nucleotide binding	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0547	F	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0006006	glucose metabolic process				P	Seeded from EcoCyc 10.6^[2].	required fields missing
	GO:0008974	phosphoribulokinase activity		HINF		F	Seeded from EcoCyc 11.1^[3].	required fields missing
	GO:0016301	kinase activity	GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR006083 SP_KW:KW-0418	F	Seeded from EcoCyc 12.5 ^[4]	complete
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Interactions

Partner Type	Partner	Notes
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Notes

Localization

Compartment	Description	Evidence	Notes
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Notes

Structure and Physical Properties

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Physical Properties

Sequence	at EcoCyc MSAKHPVIAV TGSSGAGTTT TSLAFRKIFA QLNLHAAEVE GDSFHRYTRP EMDMAIRKAR DAGRHISYFG PEANDFGLLE QTFIEYGQSG KGKSRKYLHT YDEAVPWNQV PGTFTPWQPL PEPTDVLFYE GLHGGVVTPQ HNVAQHVDLL VGVVPIVNLE WIQKLIRDTS ERGHSREAVM DSVVRSMEDY INYITPQFSR THLNFQRVPT VDTSNPFAAK GIPSLDESFV VIHFRNLEGI DFPWLLAMLQ GSFISHINTL VVPGGKMGLA MELIMLPLVQ RLMEGKKIE
Mol. Wt	32.34 kDa (calc) ^[2]
pI
Extinction coefficient	33920 (calc based on 8 Y, 4 W, and 0 C residues)
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Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
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Structure

Structures

Models

View models at:

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Notes

Gene Product Resources

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Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:EG12365-MONOMER
SwissModel (EcoliWiki Page)	SwissModel:P0AEX5
UniProt (EcoliWiki Page)	UniProt:P0AEX5
PFAM (EcoliWiki Page)	PFAM:PF00485
RefSeq (EcoliWiki Page)	RefSeq:NP_417814
ModBase (EcoliWiki Page)	ModBase:P0AEX5
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 ^4.3 ^4.4 ^4.5 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

@@ Line 77: / Line 77: @@
 |- {{table_heading_style}}
 !|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+|-
+|
+|
+[[Category:GO:0009058_!_biosynthetic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0009058_!_biosynthetic_process GO:0009058]
+|
+biosynthetic process
+|
+[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
+|
+IEA: Inferred from Electronic Annotation
+|
+[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR006083 InterPro:IPR006083]
+|
+P
+|
+Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+|
+complete
 |-
 |
@@ Line 195: / Line 214: @@
 |
-[[Category:GO:0009058_!_biosynthetic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0009058_!_biosynthetic_process GO:0009058]
+[[Category:GO:0016301_!_kinase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016301_!_kinase_activity GO:0016301]
 |
-biosynthetic process
+kinase activity
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
+[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
 |
 IEA: Inferred from Electronic Annotation
 |
-[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR006083 InterPro:IPR006083]
+[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR006083 InterPro:IPR006083]<br />[http://www.uniprot.org/keywords/KW-0418 SP_KW:KW-0418]
 |
-P
+F
 |
 Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>

prkB:Gene Product(s): Difference between revisions

Revision as of 05:25, 18 November 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

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prkB:Gene Product(s): Difference between revisions

Revision as of 05:25, 18 November 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

Search