ppdD:Gene Product(s): Difference between revisions

Standard name	PpdD product
Synonyms	predicted major pilin subunit product^[1], B0108 product^[2]^[1], PpdD product^[2]^[1]
Product description	prepilin peptidase dependent protein^[2]^[3]
EC number (for enzymes)
edit table

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

[back to top]

Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference(s)	Evidence Code	with/from	Aspect	Notes	Status
	GO:0009289	fimbrium	GO_REF:0000002 GO_REF:0000004	IEA: Inferred from Electronic Annotation	InterPro:IPR001082 SP_KW:KW-0281	C	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0007155	cell adhesion	GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001082	P	Seeded from EcoCyc 12.5 ^[4]	complete
	GO:0042995	cell projection	GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0966	C	Seeded from EcoCyc 12.5 ^[4]	complete
edit table

Interactions

Partner Type	Partner	Notes
edit table

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment	Description	Evidence	Notes
edit table

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Notes

Structure and Physical Properties

[back to top]

Physical Properties

Sequence	at EcoCyc MDKQRGFTLI ELMVVIGIIA ILSAIGIPAY QNYLRKAALT DMLQTFVPYR TAVELCALEH GGLDTCDGGS NGIPSPTTTR YVSAMSVAKG VVSLTGQESL NGLSVVMTPG WDNANGVTGW TRNCNIQSDS ALQQACEDVF RFDDAN
Mol. Wt	15.62 kDa (calc) ^[2]
pI
Extinction coefficient	16960 - 17460 (calc based on 4 Y, 2 W, and 4 C residues)
edit table

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type	Residues	Description	Notes
edit table

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Structure

Structures

Models

View models at:

edit table

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Notes

Gene Product Resources

[back to top]

Resource type	Source	Notes/Reference
edit table

See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Notes

Accessions in Other Databases

[back to top]

Database	Accession	Notes
EcoCyc (EcoliWiki Page)	EcoCyc:EG12107-MONOMER
UniProt (EcoliWiki Page)	UniProt:P36647
PFAM (EcoliWiki Page)	PFAM:PF07963
RefSeq (EcoliWiki Page)	RefSeq:NP_414650
ModBase (EcoliWiki Page)	ModBase:P36647
edit table

See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.

Notes

Links

[back to top]

Name	URL	Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

[back to top]

See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

@@ Line 77: / Line 77: @@
 |- {{table_heading_style}}
 !|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+|-
+|
+|
+[[Category:GO:0009289_!_fimbrium]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0009289_!_fimbrium GO:0009289]
+|
+fimbrium
+|
+[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
+|
+IEA: Inferred from Electronic Annotation
+|
+[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001082 InterPro:IPR001082]<br />[http://www.uniprot.org/keywords/KW-0281 SP_KW:KW-0281]
+|
+C
+|
+Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+|
+complete
 |-
 |
@@ Line 100: / Line 119: @@
 |
-[[Category:GO:0009289_!_fimbrium]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0009289_!_fimbrium GO:0009289]
+[[Category:GO:0042995_!_cell_projection]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0042995_!_cell_projection GO:0042995]
 |
-fimbrium
+cell projection
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
+[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
 |
 IEA: Inferred from Electronic Annotation
 |
-[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001082 InterPro:IPR001082]<br />[http://www.uniprot.org/keywords/KW-0281 SP_KW:KW-0281]
+[http://www.uniprot.org/keywords/KW-0966 SP_KW:KW-0966]
 |
 C

ppdD:Gene Product(s): Difference between revisions

Revision as of 05:22, 18 November 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

ppdD:Gene Product(s): Difference between revisions

Revision as of 05:22, 18 November 2008

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

Search